Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_L19
         (431 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1...    27   1.2  
SPBC21.04 |med8|sep15|mediator complex subunit Med8|Schizosaccha...    26   2.8  
SPAC4H3.01 |||DNAJ domain protein Caj1/Djp1 type|Schizosaccharom...    25   3.8  
SPAC57A10.08c |||esterase/lipase |Schizosaccharomyces pombe|chr ...    25   3.8  
SPCC338.05c |mms2|spm2|ubiquitin conjugating enzyme Mms2|Schizos...    25   5.0  
SPAC3G9.11c |||pyruvate decarboxylase |Schizosaccharomyces pombe...    25   6.6  
SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein 4|Schizosacc...    24   8.7  
SPAC4A8.10 |||lipase |Schizosaccharomyces pombe|chr 1|||Manual         24   8.7  

>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 857

 Score = 27.1 bits (57), Expect = 1.2
 Identities = 12/38 (31%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = +2

Query: 239 LDPRQH-RVSVVIHSLGITYRIGHDSHSSLWPDHWSRT 349
           + P +H + S+   + G +YR    SH+   PDH+  T
Sbjct: 267 VQPSEHPKPSISTTTTGSSYRSAESSHAPTTPDHFKLT 304


>SPBC21.04 |med8|sep15|mediator complex subunit
           Med8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 200

 Score = 25.8 bits (54), Expect = 2.8
 Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +2

Query: 218 TFRVLDELDPRQHRVSVVIHSLGITYRIGHDSHS-SLWP 331
           T + ++ L+  +HR++ ++ SL     I H S S S WP
Sbjct: 6   TEKTVESLEAIRHRIAQIVQSLTHFLAILHQSESLSPWP 44


>SPAC4H3.01 |||DNAJ domain protein Caj1/Djp1
           type|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 392

 Score = 25.4 bits (53), Expect = 3.8
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -3

Query: 204 RPDDWVAKIPIILGIAILSDKYSNQ 130
           R DDW+AK     G+  L +KY+ +
Sbjct: 187 RLDDWIAKATTEEGLNALREKYTQE 211


>SPAC57A10.08c |||esterase/lipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 364

 Score = 25.4 bits (53), Expect = 3.8
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = +2

Query: 215 LTFRVLDELDPRQHRVSVVIHSLGIT 292
           LT++VL++L P   +  ++ HS+G T
Sbjct: 162 LTYKVLEKLFPENTQFILIGHSMGAT 187


>SPCC338.05c |mms2|spm2|ubiquitin conjugating enzyme
           Mms2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 139

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 20/49 (40%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = +3

Query: 273 SIHWGLHIE*DMTLTLRYGLIIGPAR-VHLNYILCSLITESDPRDPDEP 416
           S  +GL    D+TL+     I+GPA  VH N I  SL    D   PD P
Sbjct: 25  SCSYGLTNADDITLSDWNATILGPAHSVHENRIY-SLKIHCDANYPDAP 72


>SPAC3G9.11c |||pyruvate decarboxylase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 570

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = +2

Query: 155 IAMPRMIGIFATQSSGLVLPLTFRVLDELDPRQHRV 262
           +A+P   G F T +S L  PL F V +     +H V
Sbjct: 169 LAVPSDAGYFYTDASPLKTPLVFPVPENNKEIEHEV 204


>SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein
           4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 636

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 7/20 (35%), Positives = 15/20 (75%)
 Frame = -3

Query: 297 RYVIPSEWITTLTLC*RGSS 238
           + ++ SEW+ ++TLC  G++
Sbjct: 615 KQIMKSEWVRSITLCEAGNA 634


>SPAC4A8.10 |||lipase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 723

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 12/24 (50%), Positives = 15/24 (62%), Gaps = 3/24 (12%)
 Frame = +2

Query: 245 PRQHRVSVVIHSLG---ITYRIGH 307
           PR   +SVV HSLG    TY +G+
Sbjct: 317 PRYSHISVVAHSLGGLVQTYAVGY 340


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,710,827
Number of Sequences: 5004
Number of extensions: 31560
Number of successful extensions: 78
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 154067960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)