Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_L19
         (431 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1700 - 28810239-28810870,28811304-28812594                       29   1.6  
09_03_0069 - 12056342-12056521,12057274-12057540                       27   4.9  
08_01_0606 - 5321751-5321819,5321950-5322192,5322279-5322377,532...    27   6.5  
01_06_1797 + 39941482-39941608,39942302-39942497,39942601-399428...    27   8.6  

>07_03_1700 - 28810239-28810870,28811304-28812594
          Length = 640

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
 Frame = -3

Query: 246 GSSSSKTRKVRGSTR--PDDWVAKIPIILGIA 157
           GS S+K   +RG T   P DW  ++ IILG A
Sbjct: 423 GSFSTKLHGIRGVTEKTPLDWSTRVKIILGTA 454


>09_03_0069 - 12056342-12056521,12057274-12057540
          Length = 148

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +1

Query: 4  LSCIIDLLYMVYLCFLLMLVCFID 75
          L C   LL + ++CFLL  VC +D
Sbjct: 13 LCCFTALLSLAFVCFLLPYVCPLD 36


>08_01_0606 -
           5321751-5321819,5321950-5322192,5322279-5322377,
           5322463-5322942,5323069-5323167,5323306-5323427,
           5323517-5323635,5323734-5323801,5323889-5324074,
           5324169-5324244,5324339-5324418,5324505-5324561,
           5324980-5325122,5325208-5325352,5325652-5325813,
           5325893-5326078,5326263-5326355,5326437-5326597,
           5327005-5327109,5328263-5328278
          Length = 902

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -3

Query: 213 GSTRPDDWVAKIPIILGIAILSDKYSNQVQKQN 115
           GS    DW AK P++LG+  +  K   ++ + N
Sbjct: 784 GSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSN 816


>01_06_1797 +
           39941482-39941608,39942302-39942497,39942601-39942828,
           39943157-39943388,39943476-39943583,39943696-39943968,
           39944261-39944545
          Length = 482

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +2

Query: 236 ELDPRQHRVSVVIHSLGITYRIGHDSHSSLW 328
           ++DP     S VIH L +T+ +G + H S W
Sbjct: 56  DVDPNSPTYSQVIHRLPVTH-VGDELHHSGW 85


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,486,944
Number of Sequences: 37544
Number of extensions: 185408
Number of successful extensions: 434
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 427
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 434
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 814473264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)