Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_L17
         (550 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c...    27   1.4  
SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase |S...    27   1.4  
SPAC105.01c |||potassium ion/proton antiporter|Schizosaccharomyc...    26   3.2  
SPBC1198.06c |||mannan endo-1,6-alpha-mannosidase |Schizosacchar...    25   5.6  
SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces pomb...    25   5.6  
SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr...    25   7.3  
SPAC22G7.10 |||mRNA cleavage and polyadenylation specificity fac...    25   7.3  
SPAC3F10.05c |mug113||DUF1766 family protein|Schizosaccharomyces...    25   7.3  
SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces...    25   9.7  
SPAC20G8.04c |||mitochondrial electron transfer flavoprotein-ubi...    25   9.7  
SPAC1F7.13c |rpl801|rpl8-1, rpl18, rpk5a, rpl2-1, SPAC21E11.02c|...    25   9.7  
SPBC2F12.07c |rpl802|rpl8-2, rpk37, rpk5b|60S ribosomal protein ...    25   9.7  
SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces ...    25   9.7  
SPBC146.09c |lsd1|swm1, saf110|histone demethylase SWIRM1|Schizo...    25   9.7  
SPAC13F5.02c |ptr6|taf7|transcription factor TFIID complex subun...    25   9.7  
SPBC839.04 |rpl803|rpl8-3, rpk5-b, rpkD4|60S ribosomal protein L...    25   9.7  

>SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1717

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 17/58 (29%), Positives = 24/58 (41%)
 Frame = -3

Query: 317  ISDLIGHRDCLQFLYVLSSFAHINVYVVIYVKDEAVAFIHGRYQWVYLSHSNIPLAFN 144
            +  L G  D  Q   VL       +  V+   D+ V  ++  Y W Y  H NI +A N
Sbjct: 1461 VMTLEGSTDLAQSTVVLPPLP-TEIADVLDAHDQRVLDLYKTYAWYYQKHGNIGVAAN 1517


>SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 362

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 22/103 (21%), Positives = 49/103 (47%), Gaps = 1/103 (0%)
 Frame = +3

Query: 225 DINNDIYVYVGERTKNVEKLKAISMANQIRDQDHNGRGRVEIIDQYSNEVDTQKFFTALG 404
           D+ ND      E + + E++  IS+ +   +++ NG  R+E ++    + +  +      
Sbjct: 134 DLENDFLYGADEFSSDEEEMDDISVTSSEEEEEENG-ARIEELNSDEEDAEQAEEEILEK 192

Query: 405 SGTRDIVPEESAGGDDQAFERNEEQTVSLSEVSDS-SGKVKAT 530
              +D V E+ +       ++ E++  +  +VSDS +GK + T
Sbjct: 193 PVPKDEVAEKHS---KDKLKKEEKEKKTAVDVSDSVNGKKRKT 232


>SPAC105.01c |||potassium ion/proton antiporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 898

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 5/48 (10%)
 Frame = -3

Query: 335 STVVVLI-----SDLIGHRDCLQFLYVLSSFAHINVYVVIYVKDEAVA 207
           S VV+LI     +DLI     L+FLY  +S A+I  Y   Y  D A +
Sbjct: 676 SKVVILIYLGTENDLIALELLLKFLYEETSIAYIYTYDEFYKDDYATS 723


>SPBC1198.06c |||mannan endo-1,6-alpha-mannosidase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 466

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 17/49 (34%), Positives = 26/49 (53%)
 Frame = -3

Query: 362 ILINNFNTTSTVVVLISDLIGHRDCLQFLYVLSSFAHINVYVVIYVKDE 216
           ++IN+ NTT+T+VV   D    R    FL  LS+   +   +   V+DE
Sbjct: 406 VVINDTNTTTTIVVKEKD----RGGAGFLTFLSAIFILGASIWALVEDE 450


>SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 929

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +3

Query: 429 EESAGGDDQAFERNEEQTVSLSEVSDSSGKV 521
           EESAG D +  E N+EQ  S    S+   ++
Sbjct: 35  EESAGFDSEELEDNDEQGYSFGVNSEDDEEI 65


>SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 905

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +3

Query: 273 VEKLKAISMANQIRDQDHNGRGRVEIIDQYSNEVD 377
           +E  KA S  N IR++ H+G    ++ID    + D
Sbjct: 770 IEFFKAGSALNLIREKAHSGVVNQKVIDSIKQQPD 804


>SPAC22G7.10 |||mRNA cleavage and polyadenylation specificity factor
           complex subunit, Fip1 homolog |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 344

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -2

Query: 162 HSSCL*PGTYVSRHPDSSRR 103
           HS    P  YV+ +P SSRR
Sbjct: 242 HSGAATPNAYVNNNPSSSRR 261


>SPAC3F10.05c |mug113||DUF1766 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 326

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 7/24 (29%), Positives = 15/24 (62%)
 Frame = +3

Query: 171 RQVDPLISSMNKGDCFILDINNDI 242
           R+V  ++  +N GD F+L++   +
Sbjct: 110 REVTTIVKDLNNGDSFVLNVTEPV 133


>SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1155

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +1

Query: 31  VTTSYSTSHLHYNTWMG 81
           + TSYS S + Y++W G
Sbjct: 68  IDTSYSNSQICYSSWQG 84


>SPAC20G8.04c |||mitochondrial electron transfer
           flavoprotein-ubiquinone
           oxidoreductase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 632

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -1

Query: 238 SLFMSRMKQSPLFMDDISGSTCL 170
           +L   RMKQ+P F   + G  CL
Sbjct: 355 ALEFQRMKQNPFFAKVLKGGKCL 377


>SPAC1F7.13c |rpl801|rpl8-1, rpl18, rpk5a, rpl2-1, SPAC21E11.02c|60S
           ribosomal protein L8|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 253

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 13/43 (30%), Positives = 20/43 (46%)
 Frame = +3

Query: 315 DQDHNGRGRVEIIDQYSNEVDTQKFFTALGSGTRDIVPEESAG 443
           D+   GR     +    ++VDT K    L SG + +VP  + G
Sbjct: 121 DRGALGRSSGNYVIIVGHDVDTGKTRVKLPSGAKKVVPSSARG 163


>SPBC2F12.07c |rpl802|rpl8-2, rpk37, rpk5b|60S ribosomal protein
           L8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 253

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 13/43 (30%), Positives = 20/43 (46%)
 Frame = +3

Query: 315 DQDHNGRGRVEIIDQYSNEVDTQKFFTALGSGTRDIVPEESAG 443
           D+   GR     +    ++VDT K    L SG + +VP  + G
Sbjct: 121 DRGALGRSSGNYVIIVGHDVDTGKTRVKLPSGAKKVVPSSARG 163


>SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1213

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = +3

Query: 210 DCFILDINNDIYVYV 254
           DC I+D+ ND ++Y+
Sbjct: 854 DCQIMDVRNDYHLYI 868


>SPBC146.09c |lsd1|swm1, saf110|histone demethylase
           SWIRM1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1000

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 22/84 (26%), Positives = 35/84 (41%), Gaps = 5/84 (5%)
 Frame = +3

Query: 186 LISSMNKGDCFILDINNDIYVYVGERTKNVEKLKAISMANQ----IRDQDHNGRGRVEII 353
           L  S+  G C++   N  +YV   E    V + KA  +A+     +    H   G + II
Sbjct: 187 LYLSIRNGICYLWHRNPTLYVSFNEALGIVREKKAFPLASLAFEFLSRNGHINYGCIYII 246

Query: 354 DQYS-NEVDTQKFFTALGSGTRDI 422
                +E  +QK    +G+G   I
Sbjct: 247 SSLKLDESLSQKTVAIIGAGMAGI 270


>SPAC13F5.02c |ptr6|taf7|transcription factor TFIID complex subunit
           Taf7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 393

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 11/42 (26%), Positives = 20/42 (47%)
 Frame = +3

Query: 399 LGSGTRDIVPEESAGGDDQAFERNEEQTVSLSEVSDSSGKVK 524
           L   TR+   E  A G++ A E  EE+     E +++  + +
Sbjct: 290 LSQDTRESTAEPRAAGEESASEEEEEEEEEEEEENEADDETR 331


>SPBC839.04 |rpl803|rpl8-3, rpk5-b, rpkD4|60S ribosomal protein
           L8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 253

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 13/43 (30%), Positives = 20/43 (46%)
 Frame = +3

Query: 315 DQDHNGRGRVEIIDQYSNEVDTQKFFTALGSGTRDIVPEESAG 443
           D+   GR     +    ++VDT K    L SG + +VP  + G
Sbjct: 121 DRGALGRSSGNYVIIVGHDVDTGKTRVKLPSGAKKVVPSSARG 163


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,361,819
Number of Sequences: 5004
Number of extensions: 50029
Number of successful extensions: 162
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)