Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_L17
         (550 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    23   2.7  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   6.2  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    21   8.2  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    21   8.2  

>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = -3

Query: 287 LQFLYVLSSFAHINVYVVIYVKDEAVAFIHGRYQWV 180
           LQFL V+SS   +NV     + ++++ +   +YQ V
Sbjct: 637 LQFLVVISSSNPLNVPYGPVIPEQSLTYQDQQYQVV 672


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.4 bits (43), Expect = 6.2
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = +1

Query: 289 QSLWPIRSEIRTTTVE 336
           ++LWP   ++R +TVE
Sbjct: 578 RALWPTEWKVRPSTVE 593


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -2

Query: 480 SVLRSFRKLDRHLRHFLPALYPWCLI 403
           SVL+    L RH  +FL  +Y  C++
Sbjct: 232 SVLQVSFNLQRHTGYFLIQVYVPCVL 257


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = -2

Query: 480 SVLRSFRKLDRHLRHFLPALYPWCLI 403
           S+L  +  L RH+ +FL  +Y  C++
Sbjct: 201 SMLLVYFHLQRHMGNFLIQVYGPCVL 226


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 159,908
Number of Sequences: 438
Number of extensions: 3890
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15704448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)