Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_L16
         (583 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_06_0324 + 22343508-22343561,22343789-22343860,22344165-223442...    30   1.5  
10_01_0211 - 2268191-2268247,2268916-2268944,2270892-2271777           29   3.6  
08_02_1564 + 27892707-27892760,27892875-27892946,27893049-278931...    29   3.6  
08_02_1002 + 23439642-23440046,23440558-23440761,23440874-234409...    29   3.6  
03_02_0178 + 6195402-6199158,6199438-6200003                           29   3.6  
04_03_0118 - 11474060-11475298                                         28   4.7  
04_04_0379 + 24828928-24829258,24829945-24829996,24830366-24830546     27   8.2  

>09_06_0324 +
           22343508-22343561,22343789-22343860,22344165-22344200,
           22344466-22344517,22344638-22344718,22344900-22345018,
           22345114-22345333,22345507-22345625,22345717-22345842,
           22346092-22346232,22346773-22347096
          Length = 447

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 21/72 (29%), Positives = 30/72 (41%)
 Frame = +3

Query: 180 LGKAGHPLTWLSAAKHPKTNGGILLEARQGDKIVGTWTVSPDDTFSQPLNCGEPNNAVTH 359
           +G  G PLT L   +  +  GGI  +A     + G + V    TF  P+        V H
Sbjct: 270 VGVGGRPLTTLFKGQVAEEKGGIKTDAFFETSVPGVYAVGDVATF--PMKMYNELRRVEH 327

Query: 360 KMHAKELDRQTV 395
             HA++   Q V
Sbjct: 328 VDHARKSAEQAV 339


>10_01_0211 - 2268191-2268247,2268916-2268944,2270892-2271777
          Length = 323

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = -2

Query: 228 GVLPLITTSMDD-QLYRADSCSDGVRRW 148
           G L L+T S D  Q++    CS+GV RW
Sbjct: 194 GYLGLVTLSYDSLQIWERKVCSEGVTRW 221


>08_02_1564 +
           27892707-27892760,27892875-27892946,27893049-27893100,
           27893225-27893305,27893768-27893886,27894102-27894321,
           27894475-27894593,27894683-27894808,27894993-27895133,
           27895240-27895563
          Length = 435

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 19/72 (26%), Positives = 31/72 (43%)
 Frame = +3

Query: 180 LGKAGHPLTWLSAAKHPKTNGGILLEARQGDKIVGTWTVSPDDTFSQPLNCGEPNNAVTH 359
           +G  G PLT L   +  +  GGI  +A     + G + ++  D  + P+        V H
Sbjct: 258 VGVGGRPLTHLFKGQVAEEKGGIKTDAFFETSVPGVYAIA--DVAAFPMKLYNEIRRVEH 315

Query: 360 KMHAKELDRQTV 395
             HA++   Q V
Sbjct: 316 VDHARKSAEQAV 327


>08_02_1002 +
           23439642-23440046,23440558-23440761,23440874-23440990,
           23441116-23441511,23441586-23441938,23442067-23442187,
           23442602-23442781,23442813-23442896,23444398-23444523,
           23445286-23445588
          Length = 762

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = -2

Query: 150 WYCLTYSVPGIMSKHALAVLRWGKRW*APPPMQLL 46
           W CL   +PG   +HA+  +   +R  +PPP+Q++
Sbjct: 718 WVCL--QLPGERRRHAVEAVEASRRSPSPPPIQVV 750


>03_02_0178 + 6195402-6199158,6199438-6200003
          Length = 1440

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 16/47 (34%), Positives = 20/47 (42%), Gaps = 1/47 (2%)
 Frame = -2

Query: 387  VCLILWHASCGSRRYLVHHS*GVARRYHRG-LRSKCRRSCHPDELPG 250
            VCL   H  CG R  L+      +R Y    L+  C    HP E+ G
Sbjct: 1137 VCLHWCHTDCGLRHSLIRKGGSGSRAYSTNELQFHCAACGHPSEMFG 1183


>04_03_0118 - 11474060-11475298
          Length = 412

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -2

Query: 315 RRYHRGLRSKCRRSCHPDE 259
           R+YH   R  C  SC+PDE
Sbjct: 304 RKYHAIFRKHCTPSCYPDE 322


>04_04_0379 + 24828928-24829258,24829945-24829996,24830366-24830546
          Length = 187

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 16/36 (44%), Positives = 21/36 (58%)
 Frame = -2

Query: 183 RADSCSDGVRRWYCLTYSVPGIMSKHALAVLRWGKR 76
           RA SC  G+RR   L     G  S+ ALAVL+ G++
Sbjct: 40  RAASCVRGIRRGEGLRGRSGGAESRGALAVLQEGRK 75


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,058,377
Number of Sequences: 37544
Number of extensions: 434587
Number of successful extensions: 1140
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1140
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1364465340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)