Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_L16
         (583 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF040645-4|AAB94974.1|  306|Caenorhabditis elegans Hypothetical ...    31   0.60 
U41264-7|AAA82427.2|  819|Caenorhabditis elegans Hypothetical pr...    30   1.0  
AF036702-7|AAB88372.1|  360|Caenorhabditis elegans Hypothetical ...    28   4.2  
AC006648-9|AAF39858.2|  306|Caenorhabditis elegans Btb and math ...    28   4.2  
AF040653-12|AAB95023.2|  257|Caenorhabditis elegans Hypothetical...    28   5.6  
Z81120-2|CAB03344.2|  426|Caenorhabditis elegans Hypothetical pr...    27   9.7  
Z73906-2|CAA98115.1|  586|Caenorhabditis elegans Hypothetical pr...    27   9.7  

>AF040645-4|AAB94974.1|  306|Caenorhabditis elegans Hypothetical
           protein F52C6.8 protein.
          Length = 306

 Score = 31.1 bits (67), Expect = 0.60
 Identities = 16/67 (23%), Positives = 27/67 (40%)
 Frame = +3

Query: 207 WLSAAKHPKTNGGILLEARQGDKIVGTWTVSPDDTFSQPLNCGEPNNAVTHKMHAKELDR 386
           W  A  H K +  + L      K   TW +  +  F+   +CG+ +   T K   K  + 
Sbjct: 38  WYMAVSHKKEDMAVYLHCNILGKAEATWCIDAEFEFTLKNSCGKRS---TKKTAVKFTNS 94

Query: 387 QTVSYPW 407
           + + Y W
Sbjct: 95  ENIGYGW 101


>U41264-7|AAA82427.2|  819|Caenorhabditis elegans Hypothetical
           protein F10E7.4 protein.
          Length = 819

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 13/48 (27%), Positives = 26/48 (54%)
 Frame = +3

Query: 366 HAKELDRQTVSYPWTAPKDLEGDVVFKVTIVKSYAVFWVGIESAPVKV 509
           HA    + +V   W AP+   G VVF+ +++++  +++   E   VK+
Sbjct: 125 HANLKSKTSVHMMWKAPEVSSGCVVFRASVIETKYIWFTEAEGLTVKL 172


>AF036702-7|AAB88372.1|  360|Caenorhabditis elegans Hypothetical
           protein F33D4.4 protein.
          Length = 360

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -3

Query: 89  GGVSAGKRHHRCNCYYVSEHHLFYKFQ 9
           GG+  G   H C  ++VSEH++F K Q
Sbjct: 215 GGLVLGMGLHPCAGHFVSEHYVFKKDQ 241


>AC006648-9|AAF39858.2|  306|Caenorhabditis elegans Btb and math
           domain containingprotein 3 protein.
          Length = 306

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 15/67 (22%), Positives = 28/67 (41%)
 Frame = +3

Query: 207 WLSAAKHPKTNGGILLEARQGDKIVGTWTVSPDDTFSQPLNCGEPNNAVTHKMHAKELDR 386
           W  A  H K +  + L      +   TW ++ +  F+   +CG+ +   T K   K  + 
Sbjct: 38  WYMAVSHKKEDMAVYLHCNILGQTEETWCINAEFEFTLKNSCGKRS---TEKTTVKFTNL 94

Query: 387 QTVSYPW 407
           + + Y W
Sbjct: 95  ENIVYGW 101


>AF040653-12|AAB95023.2|  257|Caenorhabditis elegans Hypothetical
           protein K05F6.10 protein.
          Length = 257

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 17/54 (31%), Positives = 25/54 (46%)
 Frame = +2

Query: 92  STASACFDMIPGTLYVRQYQRLTPSLQLSAR*SWSSIDVVISGKTPEDKWRHPP 253
           +TA A F    GT  VR+    TP +  S   S      ++  +  E+ W+HPP
Sbjct: 80  TTAKANFGR-EGTRQVRRQDDTTPGITKSEPISPLGHGSIMQARRLEEVWKHPP 132


>Z81120-2|CAB03344.2|  426|Caenorhabditis elegans Hypothetical
           protein T12D8.4 protein.
          Length = 426

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +3

Query: 258 ARQGDKIVGTWTVSPDDTFSQPLNCGEPNNAVT 356
           +R+   +VG   ++ D   ++P  C E N+AVT
Sbjct: 142 SRKAFTVVGIEDINSDPKLNEPATCVESNHAVT 174


>Z73906-2|CAA98115.1|  586|Caenorhabditis elegans Hypothetical
           protein D2030.2a protein.
          Length = 586

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -2

Query: 252 GGCRHLSSGVLPLITTSMDDQLYRADSCS 166
           G CRH S  + PL T +  ++    DSC+
Sbjct: 73  GQCRHCSKPLKPLPTLTPSNRYIHCDSCN 101


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,429,501
Number of Sequences: 27780
Number of extensions: 327154
Number of successful extensions: 690
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 664
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 690
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1215936170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)