Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_L16
         (583 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   2.2  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   2.2  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    22   5.1  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    22   5.1  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    22   5.1  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    22   5.1  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   8.9  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   8.9  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = +3

Query: 453 IVKSYAVFWVGIESAPVKV 509
           ++ S+  FW+  E+AP +V
Sbjct: 259 VIMSWVSFWIKPEAAPARV 277


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 9/23 (39%), Positives = 17/23 (73%)
 Frame = +1

Query: 157 YTITTAVSSVKLVIH*RGYQRQN 225
           +TI ++V++ K+++  R Y RQN
Sbjct: 266 FTIQSSVTTSKMMVSPRLYDRQN 288



 Score = 21.8 bits (44), Expect = 5.1
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = +2

Query: 503 KGSKSLNHVSHHHLLDVNINLYY 571
           K ++S+NH+  HH  D  ++  Y
Sbjct: 756 KKARSVNHLLTHHEYDYELSRGY 778


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 11/41 (26%), Positives = 20/41 (48%)
 Frame = +3

Query: 453 IVKSYAVFWVGIESAPVKVLSH*IMSVIITYLMSTLICITN 575
           ++ S+  FW+   + P +V     + V     M+TL+  TN
Sbjct: 235 VIISWVSFWLNRNATPARV----ALGVTTVLTMTTLMSSTN 271


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 11/41 (26%), Positives = 20/41 (48%)
 Frame = +3

Query: 453 IVKSYAVFWVGIESAPVKVLSH*IMSVIITYLMSTLICITN 575
           ++ S+  FW+   + P +V     + V     M+TL+  TN
Sbjct: 235 VIISWVSFWLNRNATPARV----ALGVTTVLTMTTLMSSTN 271


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 11/41 (26%), Positives = 20/41 (48%)
 Frame = +3

Query: 453 IVKSYAVFWVGIESAPVKVLSH*IMSVIITYLMSTLICITN 575
           ++ S+  FW+   + P +V     + V     M+TL+  TN
Sbjct: 174 VIISWVSFWLNRNATPARV----ALGVTTVLTMTTLMSSTN 210


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -3

Query: 125 LGSCRSTR*RCSGGVSAGKRHH 60
           LGS  ST   CSG V++   +H
Sbjct: 490 LGSVSSTESTCSGEVASLTEYH 511


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 11/37 (29%), Positives = 16/37 (43%)
 Frame = -2

Query: 234 SSGVLPLITTSMDDQLYRADSCSDGVRRWYCLTYSVP 124
           +SGV+ +        +  A +C     RWY  T S P
Sbjct: 243 NSGVVHVAQDESTSLVCVAQACPTPEYRWYAQTGSEP 279


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 11/37 (29%), Positives = 16/37 (43%)
 Frame = -2

Query: 234 SSGVLPLITTSMDDQLYRADSCSDGVRRWYCLTYSVP 124
           +SGV+ +        +  A +C     RWY  T S P
Sbjct: 243 NSGVVHVAQDESTSLVCVAQACPTPEYRWYAQTGSEP 279


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,083
Number of Sequences: 438
Number of extensions: 3879
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16870914
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)