Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_L10
         (183 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|c...    24   2.3  
SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    24   3.1  
SPCC24B10.18 |||human Leydig cell tumor 10 kDa protein homolog|S...    24   3.1  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    23   4.0  
SPBC83.07 |jmj3||Lid2 complex subunit Jmj3|Schizosaccharomyces p...    23   5.3  
SPCC285.10c |||SPRY domain protein|Schizosaccharomyces pombe|chr...    23   5.3  
SPCC1450.11c |cek1||serine/threonine protein kinase Cek1|Schizos...    23   5.3  
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch...    23   7.0  
SPBP8B7.25 |cyp4||cyclophilin family peptidyl-prolyl cis-trans i...    22   9.3  
SPBP4H10.10 |||rhomboid family protease|Schizosaccharomyces pomb...    22   9.3  

>SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 807

 Score = 24.2 bits (50), Expect = 2.3
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = +1

Query: 4   AFVFLLRRMAWLRNRVTWWTI 66
           AF F+    +WLR    WW I
Sbjct: 617 AFAFIRDSSSWLRVSEGWWMI 637


>SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 262

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +2

Query: 74  PSDGNSDHVVIANPDPFFSQPSNGP 148
           P+ GN D+   +   P +SQPS  P
Sbjct: 85  PAVGNQDYSKPSYSQPSYSQPSQPP 109


>SPCC24B10.18 |||human Leydig cell tumor 10 kDa protein
           homolog|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 93

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 11/30 (36%), Positives = 14/30 (46%)
 Frame = -1

Query: 114 GFAITTWSLLPSDGHHYCPPRDSVSQPCHT 25
           G  +T  S  P  G  YC PR + +   HT
Sbjct: 17  GGRVTKHSKNPKKGARYCAPRRAAAIKDHT 46


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 23.4 bits (48), Expect = 4.0
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = +2

Query: 74  PSDGNSDHVVIANPDPFFSQPSNGPSGNYEPQ 169
           P+D NS +V    P  +   P+  P  +YE +
Sbjct: 844 PADFNSLNVDFYEPHSYLESPAPEPQPSYEEE 875


>SPBC83.07 |jmj3||Lid2 complex subunit Jmj3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 752

 Score = 23.0 bits (47), Expect = 5.3
 Identities = 7/21 (33%), Positives = 15/21 (71%)
 Frame = +2

Query: 86  NSDHVVIANPDPFFSQPSNGP 148
           N D++  ++ DP +++PS+ P
Sbjct: 467 NGDNIEFSHFDPLYTRPSSHP 487


>SPCC285.10c |||SPRY domain protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 382

 Score = 23.0 bits (47), Expect = 5.3
 Identities = 11/24 (45%), Positives = 12/24 (50%)
 Frame = -1

Query: 105 ITTWSLLPSDGHHYCPPRDSVSQP 34
           I  W L P+ G    PP  S SQP
Sbjct: 291 IKKWRLAPAVGSLAPPPSYSTSQP 314


>SPCC1450.11c |cek1||serine/threonine protein kinase
           Cek1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1338

 Score = 23.0 bits (47), Expect = 5.3
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +2

Query: 95  HVVIANPDPFFSQPSNGPSGNY 160
           HV ++NPD     P +  S NY
Sbjct: 478 HVSLSNPDFAIGSPMSQDSSNY 499


>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
            Slh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1935

 Score = 22.6 bits (46), Expect = 7.0
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -1

Query: 75   GHHYCPPRDSVSQPCHTAKKKH 10
            G  YCP   S+++P   A K H
Sbjct: 1338 GRAYCPRMMSMNKPAFQAIKTH 1359


>SPBP8B7.25 |cyp4||cyclophilin family peptidyl-prolyl cis-trans
           isomerase Cyp4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 201

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = -1

Query: 135 G*EKKGSGFAITTWSLLPSDGHH 67
           G +  GS F ITT      DGHH
Sbjct: 127 GPDSNGSQFFITTVKTPWLDGHH 149


>SPBP4H10.10 |||rhomboid family protease|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 392

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 7/8 (87%), Positives = 8/8 (100%)
 Frame = +1

Query: 55  WWTIVVSI 78
           WWT+VVSI
Sbjct: 169 WWTLVVSI 176


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 832,089
Number of Sequences: 5004
Number of extensions: 13407
Number of successful extensions: 39
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 39
length of database: 2,362,478
effective HSP length: 41
effective length of database: 2,157,314
effective search space used: 40988966
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)