Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_L10
         (183 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1313 - 29252335-29252446,29253430-29253671,29253770-292538...    28   0.92 
02_01_0547 + 4032161-4032418,4032747-4032953,4033216-4033569           27   1.6  
02_01_0382 - 2772378-2773544                                           25   6.5  
06_03_1041 - 27086661-27086981,27087089-27087295,27087398-270876...    25   8.6  

>06_03_1313 -
           29252335-29252446,29253430-29253671,29253770-29253848,
           29254991-29255130,29255262-29255571,29255810-29255952,
           29256106-29256306,29256453-29256581,29256921-29257199,
           29258036-29259720,29261255-29261764,29261901-29262108,
           29264347-29264458,29264594-29264763
          Length = 1439

 Score = 28.3 bits (60), Expect = 0.92
 Identities = 10/25 (40%), Positives = 20/25 (80%)
 Frame = +3

Query: 15  SSSPYGMAAKQSHVVDNSGVHRTAI 89
           +SSPYG++  ++H++D  G+HR+ +
Sbjct: 273 NSSPYGVS--EAHMIDGMGLHRSNV 295


>02_01_0547 + 4032161-4032418,4032747-4032953,4033216-4033569
          Length = 272

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = -1

Query: 75  GHHYCPPRDSVSQPCHTAKKKHESF 1
           G +YC    S   PC   K+ HE F
Sbjct: 26  GDYYCMAAKSAGMPCPDYKRMHEGF 50


>02_01_0382 - 2772378-2773544
          Length = 388

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = -1

Query: 72  HHYCPPRDSVSQPCHTAKKKH 10
           HH  PPR S S P   A  +H
Sbjct: 42  HHQQPPRASASTPATPAPSRH 62


>06_03_1041 -
           27086661-27086981,27087089-27087295,27087398-27087675,
           27088360-27088471
          Length = 305

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 8/25 (32%), Positives = 13/25 (52%)
 Frame = -1

Query: 75  GHHYCPPRDSVSQPCHTAKKKHESF 1
           G +YC    +  +PC   ++ HE F
Sbjct: 70  GDYYCMAAKAAGKPCPDYQRMHEGF 94


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,871,793
Number of Sequences: 37544
Number of extensions: 104477
Number of successful extensions: 222
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 222
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 222
length of database: 14,793,348
effective HSP length: 40
effective length of database: 13,291,588
effective search space used: 265831760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)