Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_L08
         (519 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0196 - 1547373-1549859                                           28   5.2  
05_06_0181 - 26178006-26178836                                         27   6.8  
09_02_0356 + 7742926-7742937,7743008-7743040,7743704-7743758,774...    27   9.0  
04_03_0950 - 21049767-21050450                                         27   9.0  

>11_01_0196 - 1547373-1549859
          Length = 828

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -2

Query: 323 CDNKCMCDVCVCVLFTHIYYLHC 255
           C NKC+ D C CV+F +  ++ C
Sbjct: 370 CANKCL-DNCACVVFQYKEHMEC 391


>05_06_0181 - 26178006-26178836
          Length = 276

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +1

Query: 334 EHILSSVQRCASHSDSLPTGRRRL 405
           EH+L++    + H +SLP  RRRL
Sbjct: 240 EHLLAASGSASDHEESLPRRRRRL 263


>09_02_0356 +
           7742926-7742937,7743008-7743040,7743704-7743758,
           7744137-7745530
          Length = 497

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = +1

Query: 463 VGGGGRALDITVISDI 510
           VGGGGRA+DI  + D+
Sbjct: 181 VGGGGRAVDIFAVRDV 196


>04_03_0950 - 21049767-21050450
          Length = 227

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = -2

Query: 485 KALPPPPTIHGPFYTQYCVKVT 420
           + LPPPP +  P + ++C  +T
Sbjct: 87  RPLPPPPYLRDPMWKKFCHDIT 108


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,628,710
Number of Sequences: 37544
Number of extensions: 263963
Number of successful extensions: 633
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 622
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 633
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1130733700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)