Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_L06
         (610 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint compone...    25   6.5  
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch...    25   6.5  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    25   8.7  

>SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint component
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 809

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 19/53 (35%), Positives = 25/53 (47%)
 Frame = +1

Query: 304 FNTTYMELSPLKYNSKLMNSIWGLYNRYSPHNVKKVNDAFAFHGELQQSAANS 462
           F  +  E  P +   KL +SI    N+ SP    K N  F FH EL +S  +S
Sbjct: 723 FQRSVREFEPTR--PKLYSSID--VNQRSPLASAKTNGNFTFHAELPRSPFSS 771


>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 750

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = +1

Query: 397 NVKKVNDAFAFHGELQQSAAN-STKTEPVITLSSAKLDNV 513
           N+KK+NDA +    L QS     T+ +  IT +S   D +
Sbjct: 416 NIKKLNDAESLKSRLLQSRTQMQTELDSYITSNSQLKDEI 455


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -1

Query: 469  FWWN*QQIAAIPRGTQ 422
            FWW+ QQ   IP+G Q
Sbjct: 3583 FWWSKQQRKPIPQGIQ 3598


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,579,741
Number of Sequences: 5004
Number of extensions: 53281
Number of successful extensions: 136
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)