Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_L06
         (610 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_1243 - 35209417-35209938,35210588-35210710,35210875-352111...    30   1.6  
12_02_0626 - 21344530-21344986,21346132-21346469,21347300-213473...    29   2.9  
09_02_0176 + 5376868-5377205,5377703-5378831                           29   3.8  
11_01_0185 + 1455635-1455817,1455997-1456051,1456415-1456611,145...    28   6.7  
06_03_0021 + 15520342-15520443,15522217-15522867,15522980-155231...    28   6.7  
01_04_0054 - 15456668-15459691                                         28   6.7  

>02_05_1243 -
           35209417-35209938,35210588-35210710,35210875-35211135,
           35211400-35211846
          Length = 450

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 14/32 (43%), Positives = 20/32 (62%)
 Frame = -1

Query: 268 IVSCHGHCAEFRECALQRMLMVESKPYSSVDN 173
           +V   G+CAE  E  +QR+L+ E  P  SVD+
Sbjct: 169 LVKLIGYCAEDDERGVQRLLVYEYMPNGSVDD 200


>12_02_0626 -
           21344530-21344986,21346132-21346469,21347300-21347338,
           21347572-21347629,21349854-21350136,21350404-21350766,
           21350768-21350840
          Length = 536

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = +1

Query: 289 EPAKFFNTTYMELSPLKYNSKLMNSIWGLYNRYSPHNVKKV 411
           E     + + ++LS L YN KLM+ I G + R + HN + V
Sbjct: 272 EGIPILHISVVDLSALSYN-KLMDDIGGRFQRRAHHNFRNV 311


>09_02_0176 + 5376868-5377205,5377703-5378831
          Length = 488

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 14/50 (28%), Positives = 24/50 (48%)
 Frame = -1

Query: 199 SKPYSSVDNLYTA*EIICRGSDC*LLQFGGHLYSGPYKRRQTHQSNSLCQ 50
           + P  ++DN+    ++ C  +DC  L +GG  Y    K   ++  NS  Q
Sbjct: 368 ANPAQNLDNVANHLKLACSMADCTTLDYGGSCYGIGEKANVSYAFNSYYQ 417


>11_01_0185 + 1455635-1455817,1455997-1456051,1456415-1456611,
            1456850-1457206,1457355-1457424,1457527-1457672,
            1457786-1457831,1457910-1457962,1458507-1458651,
            1459268-1459386,1459494-1459565,1459872-1459975,
            1460117-1460173,1460260-1460452,1460535-1460678,
            1460825-1460927,1461444-1461592,1462674-1462728,
            1464037-1464227,1464580-1464701,1464831-1464978,
            1465354-1465423,1465499-1465644,1466097-1466247,
            1466614-1466732,1466807-1466848,1466849-1466961,
            1467496-1467552,1467642-1467834,1468040-1468183,
            1468567-1468665
          Length = 1280

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 13/42 (30%), Positives = 18/42 (42%)
 Frame = +1

Query: 223  GHIRETQRNARDMKLSKTSKGNEPAKFFNTTYMELSPLKYNS 348
            G +R    +     L   + GNE  + F  TY E  P  YN+
Sbjct: 993  GSVRAAMGHPEPFPLKYVALGNEDCEIFKPTYQENYPKFYNA 1034


>06_03_0021 +
           15520342-15520443,15522217-15522867,15522980-15523186,
           15523698-15523913,15523992-15524214,15525052-15525299,
           15525385-15525563,15525803-15526056,15526237-15526388
          Length = 743

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 19/59 (32%), Positives = 32/59 (54%)
 Frame = -2

Query: 555 DIILLSXRNIHSGPNIVQFGRRQSNNWFSFGGISSRLLQFPVERKSIINLLHVMWRVTV 379
           DII+L      SGP   +F  +++N    F G SS + + PVE ++I N +    R+++
Sbjct: 686 DIIVLCHGGPISGPQEAEFILKRTNRVHGFYGASS-MERLPVE-QAITNTMREYKRISI 742


>01_04_0054 - 15456668-15459691
          Length = 1007

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
 Frame = +1

Query: 355  MNSIWGLYNRYSPHNVKKVNDAFAFH-GELQQSAANSTK 468
            +  IW +YN ++P  V    D F +  GE+      STK
Sbjct: 898  VGEIWAIYNNWAPGWVPSSKDTFEYTIGEITDCTEASTK 936


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,346,322
Number of Sequences: 37544
Number of extensions: 328540
Number of successful extensions: 736
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 716
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 735
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1454766756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)