Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_L06
         (610 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000266-10|AAC71174.2|  124|Caenorhabditis elegans Hypothetical...    29   2.0  
AL117202-23|CAB97239.2| 1428|Caenorhabditis elegans Hypothetical...    29   2.6  
Z81062-6|CAB02949.2|  320|Caenorhabditis elegans Hypothetical pr...    28   4.5  
AF016428-5|ABR92601.1|  152|Caenorhabditis elegans Hypothetical ...    28   4.5  

>AF000266-10|AAC71174.2|  124|Caenorhabditis elegans Hypothetical
           protein W08F4.10 protein.
          Length = 124

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 19/64 (29%), Positives = 31/64 (48%)
 Frame = +1

Query: 100 NISGLQIEEVNNLTLDKLFLKLCKGCQLRSMASIPPSAFSAGHIRETQRNARDMKLSKTS 279
           NI  L ++  ++LTLDKL    C+  Q   +     S FS  H+ E  R    +++   S
Sbjct: 31  NIQRLDVQAYSSLTLDKLRKMNCETIQFEYL-----SEFSGTHLNEFIRYCDGLEVVDCS 85

Query: 280 KGNE 291
           +G +
Sbjct: 86  EGRD 89


>AL117202-23|CAB97239.2| 1428|Caenorhabditis elegans Hypothetical
           protein Y47D3A.29 protein.
          Length = 1428

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 20/63 (31%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
 Frame = +1

Query: 262 KLSKTSKGNEPAKFFNTTYMELSPLKYNSKLMNSIW-GLYNRYSPHNVKKVNDAFAFHGE 438
           KL    KG+  +  FNT+   L  L    K M   W  LYN YS    K  N  + F  +
Sbjct: 444 KLPSDLKGDTFSNTFNTSVTPLERLLIEKKFMGPGWIELYN-YSDPKAKTSNCKYEFEVD 502

Query: 439 LQQ 447
           +++
Sbjct: 503 MEK 505


>Z81062-6|CAB02949.2|  320|Caenorhabditis elegans Hypothetical
           protein F15A4.7 protein.
          Length = 320

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
 Frame = -3

Query: 368 QILFINLLLYFSGDNSIYVVLK-NFAGSLPLLVLDSFMSRALR*VSRMCP 222
           +I+ I+   YF  DNS +V+ + +   S  LL+ D F  R    + ++CP
Sbjct: 46  KIILISDRKYFK-DNSFFVLFRADLFASTTLLLYDIFFGRIFMYIPQLCP 94


>AF016428-5|ABR92601.1|  152|Caenorhabditis elegans Hypothetical
           protein T05C3.6b protein.
          Length = 152

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +1

Query: 340 YNSKLMNSIWGLYNRYSPHNV 402
           Y +   N+ W +Y RYSPH +
Sbjct: 129 YTTDDTNTSWNVYRRYSPHEI 149


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,349,823
Number of Sequences: 27780
Number of extensions: 300994
Number of successful extensions: 694
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 681
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 693
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1311096392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)