Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_L04
         (558 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.11 |spn1||septin Spn1|Schizosaccharomyces pombe|chr 1||...    25   5.7  
SPBC13A2.04c |||PTR family peptide transporter|Schizosaccharomyc...    25   7.5  
SPAC16E8.18 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   10.0 
SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr 1|||M...    25   10.0 

>SPAC4F10.11 |spn1||septin Spn1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 469

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = +1

Query: 100 EKKEDKLH*MQNKLHQNISTVKLNYNAQNYDMINHQD 210
           ++KED+L   +N+L      +K     Q  D+I+H++
Sbjct: 413 QEKEDRLKQSENELRTRHREMKAALEKQKADLIDHKN 449


>SPBC13A2.04c |||PTR family peptide transporter|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 618

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +1

Query: 301 TQIGTIFHSDPHLDGNINNLKRNLLVCFIYLFY 399
           T +G +   D   D  I+ LKR L  C  +LFY
Sbjct: 334 TTVGRVTLKDQWDDLFIDELKRALRACKTFLFY 366


>SPAC16E8.18 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 107

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 11/27 (40%), Positives = 14/27 (51%), Gaps = 2/27 (7%)
 Frame = -3

Query: 349 CFHQD--AGHYEKLYLFVFIIFLLSYV 275
           C H     GHYE   L V I++  S+V
Sbjct: 47  CSHYQFFGGHYESFELLVVIVYYFSHV 73


>SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1115

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -3

Query: 307 FVFIIFLLSYVTQEDEAIVSYHTKIISFIFYSYLD 203
           ++F  FL+  VT+E+   V    KI   ++Y  LD
Sbjct: 808 YIFNDFLVKEVTEEEALTVHGPWKIPIIVYYEKLD 842


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,960,713
Number of Sequences: 5004
Number of extensions: 36902
Number of successful extensions: 70
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 70
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 233995432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)