Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_L04
         (558 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0455 - 3241217-3243176,3244426-3244670,3244869-3245255           29   1.9  
07_01_0480 + 3616123-3617506,3618033-3618166,3618578-3618818,361...    28   5.8  

>06_01_0455 - 3241217-3243176,3244426-3244670,3244869-3245255
          Length = 863

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 25/85 (29%), Positives = 40/85 (47%)
 Frame = -3

Query: 346 FHQDAGHYEKLYLFVFIIFLLSYVTQEDEAIVSYHTKIISFIFYSYLDD*SYHSFEHCNL 167
           F ++ G   KL +   + ++  +V   DEA    H K    IF S L+    HS ++ +L
Sbjct: 623 FLKELGELTKLRVLA-VSWIPDHVRDSDEAHAE-HEKSYEKIFISSLNALDRHSLQYLDL 680

Query: 166 ILP*IYFDVACFASSAIYLLFFPGL 92
            L   Y D+A  A   ++  +FP L
Sbjct: 681 SLYYSYSDIA--AKRFLFDSWFPSL 703


>07_01_0480 +
           3616123-3617506,3618033-3618166,3618578-3618818,
           3618912-3619120,3619234-3619265,3619363-3619474,
           3619609-3619890
          Length = 797

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +3

Query: 96  PGKKRR*IALDAKQATSKYIYGKIKLQCSKL 188
           PGK  R  AL+    +  Y+YG++ L  S+L
Sbjct: 127 PGKVSRLAALEIVNVSGNYLYGELPLALSRL 157


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,351,576
Number of Sequences: 37544
Number of extensions: 169365
Number of successful extensions: 215
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 211
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 215
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1269546012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)