Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_L04
         (558 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83105-1|CAB05480.1|  335|Caenorhabditis elegans Hypothetical pr...    27   6.9  
Z70211-4|CAA94159.1|  825|Caenorhabditis elegans Hypothetical pr...    27   9.1  

>Z83105-1|CAB05480.1|  335|Caenorhabditis elegans Hypothetical
           protein F14H3.1 protein.
          Length = 335

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 17/67 (25%), Positives = 31/67 (46%)
 Frame = -3

Query: 343 HQDAGHYEKLYLFVFIIFLLSYVTQEDEAIVSYHTKIISFIFYSYLDD*SYHSFEHCNLI 164
           HQ  G +  L LF+F+I      +   E ++    K+  +I+  ++ D  YH   H    
Sbjct: 122 HQKLGFWALLGLFIFLISHGIVWSSVCELLLYGDQKVADYIYKQFMKD--YHVDSHGLFF 179

Query: 163 LP*IYFD 143
           L  +++D
Sbjct: 180 LMGLFYD 186


>Z70211-4|CAA94159.1|  825|Caenorhabditis elegans Hypothetical
           protein K11E4.4 protein.
          Length = 825

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 16/39 (41%), Positives = 22/39 (56%)
 Frame = -2

Query: 122 CNLSSFFSWPIIMYNTFLYS**ILSRFKFEMFEYNLKLL 6
           C+LS   S  II+Y+ FLY       F+  +F YN K+L
Sbjct: 30  CSLSGILSVAIIVYSFFLYG------FRL-LFHYNAKIL 61


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,514,979
Number of Sequences: 27780
Number of extensions: 197866
Number of successful extensions: 392
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 384
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 392
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1144922904
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)