Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0003_L03
(551 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC8C9.06c |||mitochondrial translation regulator |Schizosaccha... 31 0.11
SPCC4G3.09c |gyp3||GTPase activating protein Gyp3|Schizosaccharo... 27 1.4
SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 27 1.8
SPBC4B4.02c |nca2||mitochondrial protein Nca2 |Schizosaccharomyc... 27 2.4
SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein Sap155|Sc... 26 3.2
SPAC458.03 |||nuclear telomere cap complex subunit |Schizosaccha... 26 4.2
SPBC32H8.10 |cdk9||cyclin-dependent protein kinase Cdk9 |Schizos... 25 5.6
SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein Pop2|Schizosacchar... 25 9.8
SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr 1||... 25 9.8
>SPAC8C9.06c |||mitochondrial translation regulator
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 931
Score = 31.1 bits (67), Expect = 0.11
Identities = 23/108 (21%), Positives = 45/108 (41%)
Frame = +3
Query: 186 HDYFYWTDSTIVLGWLNTPTNKLQTFVRNRVAEIQSTTKTNDWRYVPTNLNPSDHLTRSL 365
H + +W +T +L W P F ++ S K ++ T +N SD
Sbjct: 9 HIWCFWRFNTPLL-WFPQPLKYWPAFQQSHTFNSMSVFKNDNAIANQTTVNESDVKRNVE 67
Query: 366 NAEDLFHCQLWWKGPEFLKNNKSSWPVFDFKSNNQVLPEVKQEVTSMI 509
D++ C K P F N+ S P+ ++K++ +V+ + ++
Sbjct: 68 KINDIYECSNNTKSPCF-PNSDSRIPLVNWKTSTNPTLQVRAYMLDLL 114
>SPCC4G3.09c |gyp3||GTPase activating protein
Gyp3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 635
Score = 27.5 bits (58), Expect = 1.4
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +3
Query: 402 KGPEFLKNNKSSWPVFDFKSNNQ 470
+GP+ K + SSW ++ FK NQ
Sbjct: 220 RGPKKYKPSHSSWDIYGFKKANQ 242
>SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 513
Score = 27.1 bits (57), Expect = 1.8
Identities = 21/86 (24%), Positives = 40/86 (46%), Gaps = 2/86 (2%)
Frame = +3
Query: 291 STTKTNDWRYVPTNLNPSDHLTRSLNAEDLFHCQLWWKG--PEFLKNNKSSWPVFDFKSN 464
++ +T + P++ NP++H+T + L + PEF +++ P+F S
Sbjct: 183 ASAQTQGQEHRPSSPNPAEHMTGAYVNTPLNQPPSYAASTQPEF---QQTTSPIFSSSST 239
Query: 465 NQVLPEVKQEVTSMITQSSESWFPFS 542
P + TS +Q++ FPFS
Sbjct: 240 PPPPPPRPSQPTSGESQNTNPRFPFS 265
>SPBC4B4.02c |nca2||mitochondrial protein Nca2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 573
Score = 26.6 bits (56), Expect = 2.4
Identities = 17/59 (28%), Positives = 27/59 (45%)
Frame = +3
Query: 120 LCGALLGARLSDKITSSLRLKLHDYFYWTDSTIVLGWLNTPTNKLQTFVRNRVAEIQST 296
L A L ++ K +S+RL + DY Y T W+ P + +R+ A+ Q T
Sbjct: 294 LLSAWLSTQIITKNRTSIRLWI-DYLYSTAVDFYTNWIQKPILGIFDTIRSNRADSQIT 351
>SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein
Sap155|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1188
Score = 26.2 bits (55), Expect = 3.2
Identities = 10/37 (27%), Positives = 20/37 (54%)
Frame = +3
Query: 276 VAEIQSTTKTNDWRYVPTNLNPSDHLTRSLNAEDLFH 386
V ++ +T + + W P N S+H+ + +EDL +
Sbjct: 226 VTQVSTTKRRSRWDKAPENFTISEHVIENGISEDLIN 262
>SPAC458.03 |||nuclear telomere cap complex subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 868
Score = 25.8 bits (54), Expect = 4.2
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +3
Query: 306 NDWRYVPTNLNPSDHLTRSLNAEDLFHCQLWWKGPEFLK 422
+D Y PT SD L R L + C+ + +GP+FL+
Sbjct: 640 HDQFYSPTIEKISDELERKLVFPVMSECKDYAEGPKFLQ 678
>SPBC32H8.10 |cdk9||cyclin-dependent protein kinase Cdk9
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 591
Score = 25.4 bits (53), Expect = 5.6
Identities = 10/26 (38%), Positives = 19/26 (73%)
Frame = +3
Query: 120 LCGALLGARLSDKITSSLRLKLHDYF 197
LCGA+L +++++S+ L+ H+YF
Sbjct: 315 LCGAILTLNPDERLSASMALE-HEYF 339
>SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein
Pop2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 703
Score = 24.6 bits (51), Expect = 9.8
Identities = 10/26 (38%), Positives = 13/26 (50%)
Frame = +3
Query: 306 NDWRYVPTNLNPSDHLTRSLNAEDLF 383
NDW+Y NLN L ++D F
Sbjct: 294 NDWKYANPNLNRPPFLHNDQISDDYF 319
>SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1101
Score = 24.6 bits (51), Expect = 9.8
Identities = 15/57 (26%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Frame = +3
Query: 291 STTKTNDWRYVPTNLNPSDHLTRSLNAED-LFHCQLWWKGPEFLKNNKSSWPVFDFK 458
S +K +Y+ +N+N + LTRS+ E+ +F + P F + +P+ F+
Sbjct: 513 SYSKEKRAQYIGSNMNEAVELTRSMVEENTIFLISKYASSPSFF----NEYPILKFR 565
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,234,553
Number of Sequences: 5004
Number of extensions: 45862
Number of successful extensions: 113
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 229961028
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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