Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_L03
         (551 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0941 + 33198528-33198778,33199216-33199288,33199405-331994...    29   3.3  
05_05_0278 - 23786507-23786875,23787191-23787315,23787499-237876...    27   7.5  
01_04_0024 - 15175056-15175302,15175373-15175688,15175744-151758...    27   7.5  

>01_06_0941 +
           33198528-33198778,33199216-33199288,33199405-33199452,
           33199554-33199648,33200552-33200702
          Length = 205

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = +3

Query: 228 WLNTPTNKLQTFVRNRVAEIQSTTKTNDWRYVPTNLNPSDHLTRSL 365
           WL++P  +L TFVR+  +       TN W Y  T  N  + L + +
Sbjct: 150 WLSSPV-RLSTFVRSGPSRFDWDAPTNCWIYRRTGANLVELLEKEI 194


>05_05_0278 -
           23786507-23786875,23787191-23787315,23787499-23787664,
           23787844-23787979,23788286-23788378,23788505-23788611,
           23788719-23788905,23789616-23789722,23789811-23790065,
           23791241-23791306,23791363-23791401
          Length = 549

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 12/42 (28%), Positives = 21/42 (50%)
 Frame = +3

Query: 123 CGALLGARLSDKITSSLRLKLHDYFYWTDSTIVLGWLNTPTN 248
           C + L   L   ++ S +  L ++  WTD+T+V  W    T+
Sbjct: 313 CPSDLWVLLGSALSESEKDSLQEFASWTDATVVNEWTENVTH 354


>01_04_0024 -
           15175056-15175302,15175373-15175688,15175744-15175884,
           15176024-15176526,15177542-15177600
          Length = 421

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
 Frame = +3

Query: 378 LFHCQLWWKGPEFLKNNKSSWPVFDFKSNNQVLPEVKQEV-TSMITQSSESW 530
           LF CQ+W  G  F  +N  +  V  F + + + P   Q + T  I Q  E +
Sbjct: 173 LFFCQIWHNGRVFSTDNPVTPQVSYFGNTDDLAPAAPQRLETGEIVQIVEDF 224


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,261,120
Number of Sequences: 37544
Number of extensions: 253516
Number of successful extensions: 554
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 546
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 554
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1245816180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)