Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0003_L02
(541 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 33 0.027
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 30 0.25
SPAC57A10.12c |ura3||dihydroorotate dehydrogenase Ura3|Schizosac... 28 1.0
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 27 1.3
SPBP23A10.14c |ell1||RNA polymerase II transcription elongation ... 27 2.3
SPBC1718.07c |zfs1|moc4|transcription factor Zfs1 |Schizosacchar... 26 3.1
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p... 26 4.1
SPBC1709.14 |||peptide N-glycanase |Schizosaccharomyces pombe|ch... 26 4.1
SPAC3H1.10 |||phytochelatin synthetase |Schizosaccharomyces pomb... 25 5.4
SPBC3D6.12 |||U3 snoRNA associted protein Dip2 |Schizosaccharomy... 25 7.2
SPBC19C2.09 |sre1||sterol regulatory element binding protein Sre... 25 7.2
SPAC607.08c |||DUF726 family protein|Schizosaccharomyces pombe|c... 25 7.2
SPBC11G11.07 ||SPBC18H10.01|karyopherin|Schizosaccharomyces pomb... 25 7.2
SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|... 25 7.2
SPBC1604.06c |||CBF/Mak21 family|Schizosaccharomyces pombe|chr 2... 25 9.5
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 33.1 bits (72), Expect = 0.027
Identities = 34/135 (25%), Positives = 61/135 (45%)
Frame = -1
Query: 448 SNPLRIMAELVVGGALANPNGFSNFIPHTSTDRSISSIGQWNFGSSIGESNEMPCK*QCM 269
S+P + + +L+ + S +ST S+SS + SS S+ +
Sbjct: 220 SSPSSSSSSTLTSSSLSTSSIPSTSSSSSSTSSSLSSSSSSSTASSSSSSSSIISS---S 276
Query: 268 YQAADLPSFTDSTVVSATPAKSPPTNTCGLLTLCIVFSSTSGNPQRLSFTPDIASFTSTS 89
++ P+ T ST+ S++ + S PT+T T+ SS+S LS + ++S +S S
Sbjct: 277 SSSSSSPTSTSSTISSSSSSSSSPTSTSS--TISSSSSSSSSFSSTLS-SSSMSSSSSFS 333
Query: 88 YSPEPKADMIKLAFS 44
SP + I + S
Sbjct: 334 SSPTSSSSTISSSSS 348
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 29.9 bits (64), Expect = 0.25
Identities = 34/156 (21%), Positives = 63/156 (40%), Gaps = 3/156 (1%)
Frame = -1
Query: 532 PRTIRGDTLVTIS-LSRENVLVTANPQPCSNPLRIMAELV--VGGALANPNGFSNFIPHT 362
P T T + I S + +NP P ++ + + GG+ + + +P T
Sbjct: 139 PPTSTSSTSIPIPPTSTSSTDTNSNPLPTTSTSCTTSTSIPPTGGSSSLSTPITPTVPPT 198
Query: 361 STDRSISSIGQWNFGSSIGESNEMPCK*QCMYQAADLPSFTDSTVVSATPAKSPPTNTCG 182
ST + I + S+ S+ +P + +P+ S++ + PPT+T
Sbjct: 199 STSSTSIPIPPTSTSSTDTNSSPLPTTSTSCTTSTSIPTGGSSSLSTPITPTVPPTSTSS 258
Query: 181 LLTLCIVFSSTSGNPQRLSFTPDIASFTSTSYSPEP 74
++ I +STS S P ++ +TS S P
Sbjct: 259 -TSIPIPPTSTSSTDTNSSPLPTTSTSCTTSTSIPP 293
Score = 27.1 bits (57), Expect = 1.8
Identities = 27/111 (24%), Positives = 47/111 (42%), Gaps = 1/111 (0%)
Frame = -1
Query: 412 GGALANPNGFSNFIPHTSTDRSISSIGQWNFGSSIGESNEMP-CK*QCMYQAADLPSFTD 236
GG+ + + +P TST + I + S+ SN +P C + P+
Sbjct: 125 GGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSNPLPTTSTSCTTSTSIPPTGGS 184
Query: 235 STVVSATPAKSPPTNTCGLLTLCIVFSSTSGNPQRLSFTPDIASFTSTSYS 83
S++ + PPT+T ++ I +STS S P ++ +TS S
Sbjct: 185 SSLSTPITPTVPPTSTSS-TSIPIPPTSTSSTDTNSSPLPTTSTSCTTSTS 234
>SPAC57A10.12c |ura3||dihydroorotate dehydrogenase
Ura3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 443
Score = 27.9 bits (59), Expect = 1.0
Identities = 13/22 (59%), Positives = 16/22 (72%)
Frame = +3
Query: 339 DEIDLSVEVCGIKFENPFGLAS 404
D+ L+VEV G KF NP GLA+
Sbjct: 101 DDPSLAVEVWGKKFCNPIGLAA 122
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 27.5 bits (58), Expect = 1.3
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = -3
Query: 272 HVPGSGFAVVYRFDCRLGDSS*IA 201
HVPGSG A V R C L +++ IA
Sbjct: 366 HVPGSGIAKVNRAVCMLSNTTSIA 389
>SPBP23A10.14c |ell1||RNA polymerase II transcription elongation
factor SpELL|Schizosaccharomyces pombe|chr 2|||Manual
Length = 533
Score = 26.6 bits (56), Expect = 2.3
Identities = 19/60 (31%), Positives = 29/60 (48%)
Frame = -1
Query: 235 STVVSATPAKSPPTNTCGLLTLCIVFSSTSGNPQRLSFTPDIASFTSTSYSPEPKADMIK 56
+T +S P+ T TC L+ + + PQ L TP S +ST+ + EP A+ K
Sbjct: 388 NTPISDIPSPGSST-TCSNLSSPHIKRKSRSPPQSLPSTPFPTSSSSTNGTLEPNANSPK 446
>SPBC1718.07c |zfs1|moc4|transcription factor Zfs1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 404
Score = 26.2 bits (55), Expect = 3.1
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = -1
Query: 154 STSGNPQRLSFTPDIASFTSTSY 86
++S NPQ ++TP + S +TSY
Sbjct: 113 NSSSNPQGYAWTPSLLSSNATSY 135
>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2280
Score = 25.8 bits (54), Expect = 4.1
Identities = 11/45 (24%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = -1
Query: 208 KSPPTNTCGLLTLCIVFSSTS-GNPQRLSFTPDIASFTSTSYSPE 77
+ P TN+CG++ CI + N +++ + +F S+ P+
Sbjct: 1596 REPGTNSCGMVAWCITVKTPEYPNGRKIIVVANDITFQIGSFGPQ 1640
>SPBC1709.14 |||peptide N-glycanase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 333
Score = 25.8 bits (54), Expect = 4.1
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +3
Query: 444 FEQGWGFAVTKTFSLDKDMVTNVSPRIVR 530
+EQGWG ++ D V +VS R +R
Sbjct: 219 YEQGWGKKMSYCLGFGIDSVRDVSHRYIR 247
>SPAC3H1.10 |||phytochelatin synthetase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 414
Score = 25.4 bits (53), Expect = 5.4
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = -1
Query: 187 CGLLTLCIVFSSTSGNPQRL 128
CGL TLC++ +S +P RL
Sbjct: 91 CGLGTLCMILNSLKVDPGRL 110
>SPBC3D6.12 |||U3 snoRNA associted protein Dip2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 922
Score = 25.0 bits (52), Expect = 7.2
Identities = 9/18 (50%), Positives = 14/18 (77%)
Frame = +3
Query: 201 GDLAGVAETTVESVNDGK 254
GD+A V + T+ES+ DG+
Sbjct: 726 GDVAAVTKQTIESLKDGE 743
>SPBC19C2.09 |sre1||sterol regulatory element binding protein
Sre1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 900
Score = 25.0 bits (52), Expect = 7.2
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = -1
Query: 157 SSTSGNPQRLSFTPDIASFTSTSYSPEPKADMIKLA 50
S+ NP+ T +I + T+ PEP A IKL+
Sbjct: 185 SADMSNPEVKLKTEEIITPMDTTCKPEPSAKKIKLS 220
>SPAC607.08c |||DUF726 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 579
Score = 25.0 bits (52), Expect = 7.2
Identities = 12/38 (31%), Positives = 17/38 (44%)
Frame = -1
Query: 484 ENVLVTANPQPCSNPLRIMAELVVGGALANPNGFSNFI 371
ENV+V P P L + VV G N S+++
Sbjct: 420 ENVIVMGAPMPTDAKLWLKMRCVVAGRFVNVYSASDYV 457
>SPBC11G11.07 ||SPBC18H10.01|karyopherin|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 955
Score = 25.0 bits (52), Expect = 7.2
Identities = 8/22 (36%), Positives = 18/22 (81%)
Frame = +3
Query: 111 MSGVKLNRWGLPDVDEKTMQSV 176
+SG + ++G+P++DE+T+ +V
Sbjct: 714 VSGACVRQFGVPEMDEQTLSAV 735
>SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|chr
3|||Manual
Length = 828
Score = 25.0 bits (52), Expect = 7.2
Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Frame = -1
Query: 208 KSPPTNTCGLLTLCIVFSSTSGNP--QRLSFTPDIASFTS 95
++P T ++T+ +FSST G P R TP++ +F +
Sbjct: 113 ETPKTLEIAMITVSKMFSSTVGRPAVTRELVTPNLPTFVN 152
>SPBC1604.06c |||CBF/Mak21 family|Schizosaccharomyces pombe|chr
2|||Manual
Length = 485
Score = 24.6 bits (51), Expect = 9.5
Identities = 12/49 (24%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = +3
Query: 141 LPDVDEKTMQSVSN-PQVFVGGDLAGVAETTVESVNDGKSAAWYMHCYL 284
+ D++ + +S N + V D ++ +++ VND +A ++CYL
Sbjct: 2 IKDLENEIYKSRKNLNNILVLFDYIDLSNHSIDEVNDAAAALCRVYCYL 50
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,361,969
Number of Sequences: 5004
Number of extensions: 48432
Number of successful extensions: 156
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 221892220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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