Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0003_L01
(485 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0763 - 24405525-24405701,24406209-24406368,24406924-244070... 137 5e-33
02_01_0219 - 1437685-1437723,1437932-1438091,1438385-1438514,143... 60 4e-13
04_04_1285 - 32382614-32382720,32383032-32383710,32383816-323839... 33 0.16
06_01_0088 + 698237-698251,698738-698770,699177-699280,699382-69... 29 2.0
10_08_0740 + 20225351-20225683,20225750-20226022,20226423-202265... 29 2.6
09_03_0044 - 11855569-11855664,11855775-11855891,11856572-118566... 29 2.6
11_02_0093 - 8238947-8239615 27 6.0
09_04_0597 - 18859601-18859818,18860914-18861083,18861250-188613... 27 6.0
01_06_1464 + 37537218-37537387,37537738-37537897,37539521-375397... 27 8.0
>06_03_0763 -
24405525-24405701,24406209-24406368,24406924-24407005,
24407098-24407167,24407443-24407607,24407731-24407874,
24408467-24408715,24409006-24409221,24409306-24409398
Length = 451
Score = 137 bits (331), Expect = 5e-33
Identities = 63/132 (47%), Positives = 96/132 (72%)
Frame = +3
Query: 90 NSRMPNIKVFTGSSHPEIAKKIVARLGIDLGRATTKKFSNKETNVEIGESVRGEDVYIVQ 269
+ R +K+F+G+++ +A++I + LG+DLG+ K+F++ E V++ ESVRG DV++VQ
Sbjct: 84 DGRDSRLKIFSGTANRPLAQEIASYLGVDLGKVLIKRFADGEIYVQLQESVRGCDVFLVQ 143
Query: 270 SGCGEINDNLMELFIMINACKIASASRVTAVIPCFPYSRQDKKEKSRAPITAKLLANLIS 449
C +N+NLMELF+MI+AC+ ASA +T VIP F Y+R D+K + R ITAKL ANL++
Sbjct: 144 PTCSPVNENLMELFVMIDACRRASARSITVVIPYFGYARADRKAQGREAITAKLSANLLT 203
Query: 450 VAGADHVITIDL 485
AG+D VI D+
Sbjct: 204 EAGSDRVIVCDI 215
>02_01_0219 -
1437685-1437723,1437932-1438091,1438385-1438514,
1438627-1438696,1439264-1439407,1439771-1439837,
1439970-1440019,1440386-1440559,1440881-1440934,
1441008-1441112
Length = 330
Score = 59.7 bits (138), Expect(2) = 4e-13
Identities = 29/56 (51%), Positives = 39/56 (69%)
Frame = +3
Query: 318 INACKIASASRVTAVIPCFPYSRQDKKEKSRAPITAKLLANLISVAGADHVITIDL 485
IN + ASA +TAVIP F Y+R D+K + R I AKL+AN+I+ AGA+ V+ DL
Sbjct: 124 INIKRRASAKNITAVIPYFGYARADRKSQGRESIAAKLVANMITEAGANRVLVCDL 179
Score = 31.9 bits (69), Expect(2) = 4e-13
Identities = 9/31 (29%), Positives = 25/31 (80%)
Frame = +3
Query: 108 IKVFTGSSHPEIAKKIVARLGIDLGRATTKK 200
+++F+G+++P ++++I + LG++LG+ K+
Sbjct: 98 LRIFSGTANPSLSQEIASYLGLELGKINIKR 128
>04_04_1285 -
32382614-32382720,32383032-32383710,32383816-32383926,
32384007-32384065,32384163-32384271,32384387-32384575,
32384650-32385476,32385501-32385633
Length = 737
Score = 32.7 bits (71), Expect = 0.16
Identities = 22/79 (27%), Positives = 41/79 (51%), Gaps = 2/79 (2%)
Frame = -1
Query: 236 FTNFNVCFFVAEFLCSCSTEVNSEPCNN--FFRNLRMRAPCKHFDVRHS*IWIVKSPLFF 63
F + V F V + + C+ +++S+P + F RN KHFD + +V+SP+
Sbjct: 162 FVEYGVKFGVGDTVV-CAVDLDSKPLASIGFSRNGEWLGIAKHFDASDKGLGLVESPVSS 220
Query: 62 IIFFACGFVRVHLVNLIVK 6
+ + + F V L N++V+
Sbjct: 221 MQWESAIFPHVLLKNVVVE 239
>06_01_0088 +
698237-698251,698738-698770,699177-699280,699382-699457,
699987-700070,700420-700926
Length = 272
Score = 29.1 bits (62), Expect = 2.0
Identities = 20/68 (29%), Positives = 33/68 (48%)
Frame = +3
Query: 36 DETTSKEDNKKQRAFNNPNSRMPNIKVFTGSSHPEIAKKIVARLGIDLGRATTKKFSNKE 215
D+T S +Q+ ++ M N VFTG+S A VA+ D+G T +K + ++
Sbjct: 196 DKTKSAFAAAEQKVSTAGSAIMKNRYVFTGASWVTNAFNKVAKAATDVGTMTKEKMAAED 255
Query: 216 TNVEIGES 239
+ G S
Sbjct: 256 QHKGSGPS 263
>10_08_0740 +
20225351-20225683,20225750-20226022,20226423-20226548,
20226676-20226732,20226994-20227083
Length = 292
Score = 28.7 bits (61), Expect = 2.6
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = -2
Query: 181 PRSIPSLATIFFAISG*ELPVNTLMFGILEFGLLKALCF 65
PR P FAI+ ++ L +G+L GLL LCF
Sbjct: 162 PRDGPFELNDVFAIANAAPAISLLAYGLLNRGLLPGLCF 200
>09_03_0044 -
11855569-11855664,11855775-11855891,11856572-11856682,
11856768-11856874,11857182-11857221,11857328-11857408,
11857578-11857631,11857800-11857860,11857984-11858029,
11858276-11858352,11858448-11858563,11858654-11858890
Length = 380
Score = 28.7 bits (61), Expect = 2.6
Identities = 13/34 (38%), Positives = 23/34 (67%)
Frame = +1
Query: 82 TIQIQECRTSKCLQGALIRRLRKKLLQGSELTSV 183
T +I +CR+ KC Q +IR ++ K+ +GS ++ V
Sbjct: 233 TARIWDCRSGKCTQ--VIRPVKNKIFEGSWVSCV 264
>11_02_0093 - 8238947-8239615
Length = 222
Score = 27.5 bits (58), Expect = 6.0
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = -1
Query: 197 LCSCSTEVNSEPCNNFFRNLRMRAPCKHF 111
+C CS + + EPC + R A KHF
Sbjct: 187 ICKCSVDNDDEPCKSSTRQSLKEAFRKHF 215
>09_04_0597 -
18859601-18859818,18860914-18861083,18861250-18861303,
18862759-18863284,18864465-18864663,18866787-18866852,
18866999-18867300,18867394-18867634,18867716-18867973,
18868076-18868207
Length = 721
Score = 27.5 bits (58), Expect = 6.0
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = +3
Query: 36 DETTSKEDNKKQRAFNNPNSRMPNIKVFT 122
DE Q++ NNPN MP+I FT
Sbjct: 458 DELGENHSPSLQKSANNPNRGMPSIGAFT 486
>01_06_1464 +
37537218-37537387,37537738-37537897,37539521-37539787,
37540541-37540646,37541411-37541678,37541915-37542020,
37542891-37542950,37544349-37544445,37544613-37544803,
37545518-37545583,37545879-37545944,37547510-37547583,
37547910-37548000,37548079-37548236,37548424-37548466,
37548621-37548686,37549113-37549190,37549361-37549453
Length = 719
Score = 27.1 bits (57), Expect = 8.0
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = +1
Query: 367 LASLTRGRIRRKKAELLLQQNY*PILYQWLEQT 465
L S+ R++ + ELLL++ P+ Y W + T
Sbjct: 71 LKSIGEDRVKDSELELLLKKKSAPVCYVWCDPT 103
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,563,219
Number of Sequences: 37544
Number of extensions: 211704
Number of successful extensions: 550
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 540
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 550
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 999806640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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