Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_L01
         (485 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      25   0.57 
AB083010-1|BAC54131.1|  132|Apis mellifera fatty acid binding pr...    21   7.0  
AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex det...    21   9.2  
AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex det...    21   9.2  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    21   9.2  
AB095514-1|BAC76336.1|   72|Apis mellifera ecdyson receptor prot...    21   9.2  

>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 24.6 bits (51), Expect = 0.57
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -1

Query: 161 CNNFFRNLRMRAPCKH 114
           C+ +FR L    PCKH
Sbjct: 53  CSPYFRELLKSTPCKH 68


>AB083010-1|BAC54131.1|  132|Apis mellifera fatty acid binding
           protein protein.
          Length = 132

 Score = 21.0 bits (42), Expect = 7.0
 Identities = 9/23 (39%), Positives = 11/23 (47%)
 Frame = +3

Query: 189 TTKKFSNKETNVEIGESVRGEDV 257
           TT  F N E   ++GE    E V
Sbjct: 54  TTSPFKNTEIKFKLGEEFEEETV 76


>AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 20.6 bits (41), Expect = 9.2
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = +2

Query: 83  QSKFKNAEHQSVYRELSSG 139
           Q+ +KN      YRE S G
Sbjct: 269 QNSYKNEREYRKYRETSKG 287


>AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 20.6 bits (41), Expect = 9.2
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = +2

Query: 83  QSKFKNAEHQSVYRELSSG 139
           Q+ +KN      YRE S G
Sbjct: 280 QNSYKNEREYRKYRETSKG 298


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 20.6 bits (41), Expect = 9.2
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +1

Query: 94  QECRTSKCL 120
           QECR  KCL
Sbjct: 240 QECRLKKCL 248


>AB095514-1|BAC76336.1|   72|Apis mellifera ecdyson receptor
           protein.
          Length = 72

 Score = 20.6 bits (41), Expect = 9.2
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +1

Query: 94  QECRTSKCL 120
           QECR  KCL
Sbjct: 37  QECRLKKCL 45


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 123,465
Number of Sequences: 438
Number of extensions: 2491
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13297932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)