Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_K23
         (420 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC15A10.04c |zpr1||zinc finger protein Zpr1|Schizosaccharomyce...    25   4.8  
SPCC594.07c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    25   6.3  
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    24   8.4  
SPBC1271.09 |||glycerophosphodiester transporter|Schizosaccharom...    24   8.4  

>SPAC15A10.04c |zpr1||zinc finger protein Zpr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 459

 Score = 25.0 bits (52), Expect = 4.8
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -1

Query: 189 ATLET*HQLRSLSIPLGLVVHDI*AQGWLQ 100
           A +E  + LRS S+P  + V DI    W++
Sbjct: 162 AFIEKVNSLRSGSVPFTITVDDITGNSWIE 191


>SPCC594.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 255

 Score = 24.6 bits (51), Expect = 6.3
 Identities = 8/23 (34%), Positives = 17/23 (73%)
 Frame = +3

Query: 87  FVVCSVAILVLKCRARQVPKECS 155
           F++ ++++LV +C +R  P +CS
Sbjct: 103 FIIDAISLLVARCFSRANPIKCS 125


>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 230

 Score = 24.2 bits (50), Expect = 8.4
 Identities = 11/30 (36%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
 Frame = +2

Query: 83  HICCLFCSHP-CAQMSCTTSPKGMLKDLSW 169
           H C LFC+HP     S + +PK +    S+
Sbjct: 61  HSCFLFCTHPDTLPTSLSINPKKLSLSFSF 90


>SPBC1271.09 |||glycerophosphodiester
           transporter|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 543

 Score = 24.2 bits (50), Expect = 8.4
 Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
 Frame = -2

Query: 107 GYRTDNKCAVWFVHDL--MRSSLYSAS 33
           G+R    C +WFV+DL      LYS++
Sbjct: 299 GFRLFILCLIWFVYDLSAFAFGLYSST 325


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,857,613
Number of Sequences: 5004
Number of extensions: 36924
Number of successful extensions: 90
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 148351622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)