Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_K23
         (420 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1111 + 24377268-24377444,24377543-24377630,24378072-243781...    27   4.6  
12_02_1047 + 25666113-25666442,25666606-25666651,25667042-256671...    27   6.1  

>08_02_1111 +
           24377268-24377444,24377543-24377630,24378072-24378157,
           24378358-24378511,24378723-24378883,24378964-24379632,
           24379860-24380058,24380188-24380405,24380578-24380755,
           24380859-24381358
          Length = 809

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 13/43 (30%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = +1

Query: 106 PSLCS-NVVHDKSQRNAQGPELVSSLKRGYCGAESCILVWETK 231
           P LC  + VH    + +   +  S+L+   CGA+ C+ V+E +
Sbjct: 765 PLLCHVSTVHRLRWQKSDSSDEKSALQLASCGADHCVRVFEVR 807


>12_02_1047 +
           25666113-25666442,25666606-25666651,25667042-25667130,
           25667291-25667493,25667807-25667949,25668286-25668332,
           25668794-25668870,25668952-25668981,25669068-25669163,
           25669489-25669591,25669959-25670041,25670204-25670326,
           25670465-25670576,25670791-25670898,25671006-25671593
          Length = 725

 Score = 27.1 bits (57), Expect = 6.1
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = -1

Query: 249 HWEIVTFCFPHEYT*LGPTVATLET 175
           HW ++  CFP + +  GP +  L++
Sbjct: 418 HWSLIIICFPSKESNSGPIILHLDS 442


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,074,641
Number of Sequences: 37544
Number of extensions: 237700
Number of successful extensions: 597
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 587
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 597
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 766563072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)