Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_K22
         (540 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1198.01 |||glutathione-dependent formaldehyde dehydrogenase ...    28   0.77 
SPAC56F8.11 |spc3||signal peptidase subunit Spc3 |Schizosaccharo...    26   4.1  
SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|ch...    25   5.4  
SPBC3B8.10c |||NLI interacting factor family|Schizosaccharomyces...    25   5.4  
SPBC18H10.08c |ubp4||ubiquitin C-terminal hydrolase Ubp4|Schizos...    25   7.2  
SPBC725.11c |php2||CCAAT-binding factor complex subunit Php2 |Sc...    25   9.5  
SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog Chs2|Schiz...    25   9.5  

>SPBC1198.01 |||glutathione-dependent formaldehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 423

 Score = 28.3 bits (60), Expect = 0.77
 Identities = 24/79 (30%), Positives = 35/79 (44%), Gaps = 1/79 (1%)
 Frame = +3

Query: 69  LLISVNLIRAQTCTTPRNESGNCVSLYDCEPL-LNLFRNKSRTAEDKKLLGDSQCGYENY 245
           ++I+ +L   Q     R+E   C +  D + + +N   + S      KLLGD       Y
Sbjct: 119 VVIAFDLACGQCSFCKRHEYAACDTTNDSKLMDVNYGSHHSAIFGYTKLLGDVPGCQAEY 178

Query: 246 IPMVCCPISNACKTPDD*P 302
           I +    I N CK PDD P
Sbjct: 179 IRVPFAEI-NCCKLPDDIP 196


>SPAC56F8.11 |spc3||signal peptidase subunit Spc3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 185

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 13/49 (26%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
 Frame = -3

Query: 148 YRDTQFPDSFLGVVQVCARIKF---TDINRIYETVEKIIILLLFIKYNS 11
           YR  +F  +F  V Q  A++KF    D++ +++   K +++ L   Y++
Sbjct: 52  YRSARFYHAFRNVRQQYAQVKFNMDADLSELWDWNTKHVVVYLVASYST 100


>SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 604

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = +3

Query: 216 GDSQCGYENYIPMVCC 263
           G   CGY N+   VCC
Sbjct: 452 GSEGCGYHNFAKNVCC 467


>SPBC3B8.10c |||NLI interacting factor family|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 476

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -1

Query: 390 VERNPFYSFWSYLASYK*YAHSCTNRHK 307
           V R  FYS +SY +S++  A+S   RH+
Sbjct: 151 VRRPRFYSSYSYPSSHQDPAYSSFKRHR 178


>SPBC18H10.08c |ubp4||ubiquitin C-terminal hydrolase
           Ubp4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 438

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 16/46 (34%), Positives = 20/46 (43%)
 Frame = +3

Query: 144 LYDCEPLLNLFRNKSRTAEDKKLLGDSQCGYENYIPMVCCPISNAC 281
           LY     L L  +    A  KK+  DS   YENY P+    + N C
Sbjct: 38  LYSMLRSLKLDPHFMELANPKKV--DSSLSYENYQPIGLTNLGNTC 81


>SPBC725.11c |php2||CCAAT-binding factor complex subunit Php2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 334

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -3

Query: 463 ISSGLISAGGPQHTLNVSGPLQTD 392
           +S  +  +GGP +T + SGP+  D
Sbjct: 167 MSGNIAMSGGPTNTASTSGPVPHD 190


>SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog
           Chs2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 926

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = +3

Query: 180 NKSRTAEDKKLLGDSQCGYENYIPMVCCPISNACKTPDD*PGI 308
           ++S T+ D+  L  S   Y   +P++C  ++  C TP D  G+
Sbjct: 162 SQSYTSIDR--LNSSSSHYSKDVPLLCGSLTIDCPTPIDLRGM 202


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,190,153
Number of Sequences: 5004
Number of extensions: 43881
Number of successful extensions: 87
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 221892220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)