Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_K22
         (540 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0415 + 25038826-25038835,25039333-25039964,25040484-250405...    29   2.4  
12_02_0808 - 23347167-23347205,23347361-23347439,23348555-233487...    28   4.1  
03_02_0602 + 9759055-9759223,9759305-9759455,9759548-9759593,975...    28   4.1  
03_06_0604 - 35006004-35008580                                         27   7.2  

>04_04_0415 +
           25038826-25038835,25039333-25039964,25040484-25040561,
           25040588-25040833,25041598-25041684,25041860-25042024
          Length = 405

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 18/60 (30%), Positives = 24/60 (40%)
 Frame = +3

Query: 117 RNESGNCVSLYDCEPLLNLFRNKSRTAEDKKLLGDSQCGYENYIPMVCCPISNACKTPDD 296
           R  +GN  S Y CE +L LFR         +++G   C     +P         C  PDD
Sbjct: 145 RELAGNGASAYLCEDVLGLFRKFHYFVRPSRIVGVGTCA----LPEAWIVGVGTCVLPDD 200


>12_02_0808 -
           23347167-23347205,23347361-23347439,23348555-23348718,
           23348838-23349056
          Length = 166

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 17/63 (26%), Positives = 28/63 (44%)
 Frame = +3

Query: 24  INSNKMIIFSTVSYILLISVNLIRAQTCTTPRNESGNCVSLYDCEPLLNLFRNKSRTAED 203
           + S + ++  T  Y+L I+ NL+   +C+     + NC  L  C P    F  K      
Sbjct: 103 MGSRRALVLGTSGYLLFIAANLV--PSCSEHALPTANC-RLPSCRPEAAAFCTKKMRHLT 159

Query: 204 KKL 212
           KK+
Sbjct: 160 KKI 162


>03_02_0602 +
           9759055-9759223,9759305-9759455,9759548-9759593,
           9759974-9760033,9760519-9760555,9761268-9761347,
           9761413-9761516,9761613-9761673,9762962-9763019,
           9763866-9763918,9764357-9765320,9766131-9766185,
           9767223-9768786
          Length = 1133

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = -3

Query: 460 SSGLISAGGPQHTLNVSGPLQT 395
           + GL S G P H  N+SGPL T
Sbjct: 615 TDGLRSFGSPHHFTNLSGPLTT 636


>03_06_0604 - 35006004-35008580
          Length = 858

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 5/51 (9%)
 Frame = +3

Query: 228 CGYENYIPMVCCPISN-ACKTPDD*PGIC---VGLYNCE-HITYMMLDKTR 365
           CGY    P+  CP  N     P D  G C   + L NC  + T + LD T+
Sbjct: 291 CGYNGTSPVCRCPSENFQLSNPADPRGGCRRKIELQNCPGNSTMLQLDNTQ 341


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,105,508
Number of Sequences: 37544
Number of extensions: 246026
Number of successful extensions: 492
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 485
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 492
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1198356516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)