Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0003_K19
(526 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S... 30 0.18
SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter family|Sch... 27 1.7
SPBC4F6.16c |ero11||ER oxidoreductin Ero1a|Schizosaccharomyces p... 27 2.3
SPCC24B10.11c |||THO complex subunit 7 |Schizosaccharomyces pomb... 26 3.0
SPAC3H8.08c |||transcription factor|Schizosaccharomyces pombe|ch... 26 4.0
SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces ... 26 4.0
SPAC8C9.07 |||rRNA processing protein Fyv7 |Schizosaccharomyces ... 25 6.9
SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1 ... 25 9.1
SPAC8C9.15c |tif225||translation initiation factor eIF2B epsilon... 25 9.1
>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
Mok11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2397
Score = 30.3 bits (65), Expect = 0.18
Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Frame = +3
Query: 126 SAHYLFYSLIFMNVAPNLLVL-TPIFLFALLHAASYSLTILDTLGQNSMWVARL 284
SA +Y I ++ PN+ L TP ++A A + LT +LG + +W++R+
Sbjct: 2014 SASLFWY--ILHSLVPNIYALSTPFIIYATAFALA-GLTTFSSLGDSRLWISRV 2064
>SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter
family|Schizosaccharomyces pombe|chr 3|||Manual
Length = 791
Score = 27.1 bits (57), Expect = 1.7
Identities = 15/49 (30%), Positives = 25/49 (51%)
Frame = +3
Query: 273 VARLLISLVEFQSRNILRAAALAEIVLFPLVVFMALFGYCGLMSPFVYY 419
V L+I ++F NI + +LF L +++ FG+ GL P + Y
Sbjct: 192 VNTLIIEQIKFFGVNI----GIGRAILFNLCSYLSSFGWSGLALPILVY 236
>SPBC4F6.16c |ero11||ER oxidoreductin Ero1a|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 467
Score = 26.6 bits (56), Expect = 2.3
Identities = 15/33 (45%), Positives = 21/33 (63%)
Frame = +3
Query: 84 SISREFLARFFLEDSAHYLFYSLIFMNVAPNLL 182
S S+E LA FF+ D YLFY+L F+ P ++
Sbjct: 437 SPSKEILA-FFI-DQTWYLFYALFFICNVPRVI 467
>SPCC24B10.11c |||THO complex subunit 7 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 202
Score = 26.2 bits (55), Expect = 3.0
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = -3
Query: 362 EREQNNLSERSRAQYVARLELHQRDQQSRHPHRILSKGI 246
E E+ +S+ + VA+ EL +R+Q I+SKG+
Sbjct: 80 EAEKTEISQLEQDLLVAQEELRKREQYDELAKPIMSKGL 118
>SPAC3H8.08c |||transcription factor|Schizosaccharomyces pombe|chr
1|||Manual
Length = 563
Score = 25.8 bits (54), Expect = 4.0
Identities = 19/72 (26%), Positives = 30/72 (41%)
Frame = +3
Query: 135 YLFYSLIFMNVAPNLLVLTPIFLFALLHAASYSLTILDTLGQNSMWVARLLISLVEFQSR 314
Y+F ++F NL +L TI+ LG++ + RLLIS + +
Sbjct: 398 YIFLKMVFWTARVNLYQCFITLDSGILEDEE---TIIGNLGESCIQCVRLLISQITILEK 454
Query: 315 NILRAAALAEIV 350
AL EI+
Sbjct: 455 RGWLLVALLEII 466
>SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 308
Score = 25.8 bits (54), Expect = 4.0
Identities = 11/37 (29%), Positives = 18/37 (48%)
Frame = +3
Query: 297 VEFQSRNILRAAALAEIVLFPLVVFMALFGYCGLMSP 407
+E R +AA AE++LF F+ + Y +P
Sbjct: 182 LESHLREFAKAAEAAEVILFERTTFLVISSYSSESNP 218
>SPAC8C9.07 |||rRNA processing protein Fyv7 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 144
Score = 25.0 bits (52), Expect = 6.9
Identities = 11/49 (22%), Positives = 24/49 (48%)
Frame = -3
Query: 374 HENDEREQNNLSERSRAQYVARLELHQRDQQSRHPHRILSKGIEYGERV 228
+E E ++ E+ A+ RLE+ ++ + +LSK + G+ +
Sbjct: 80 YERSEEKRRIQQEKEDAKVQKRLEIEKKQKDREQTRNMLSKKTKRGQPI 128
>SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1044
Score = 24.6 bits (51), Expect = 9.1
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Frame = -1
Query: 238 VRE*EAACRSANKNIGVKTNKFGATFMKINE*N-R*CALSSKKNRARNSLE 89
+RE E + ++ N N+G K N K++E + R L S+ N+ +N +E
Sbjct: 780 IREAELSKKALNDNLGNKENIISDLKNKLSEESTRLQELQSQLNQDKNQIE 830
>SPAC8C9.15c |tif225||translation initiation factor eIF2B epsilon
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 678
Score = 24.6 bits (51), Expect = 9.1
Identities = 10/36 (27%), Positives = 19/36 (52%)
Frame = +2
Query: 95 RVSCSIFLGGQRTLPVLLINLHERGTKFIGFDADIF 202
R S+F+ ++T + +ERG ++ D +IF
Sbjct: 171 RTESSVFVIDKKTSQCVHYQANERGKHYVSMDPEIF 206
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,878,937
Number of Sequences: 5004
Number of extensions: 37268
Number of successful extensions: 120
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 214353836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -