Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0003_K19
(526 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_05_0199 - 19174971-19175105,19176302-19176628,19176813-191769... 31 0.75
11_06_0098 - 20068488-20068616,20069039-20069257,20069431-200696... 30 1.3
04_03_0258 - 13573730-13573816,13573881-13574666,13575043-135751... 29 1.7
04_01_0488 - 6419731-6420843 29 1.7
01_06_1072 + 34295227-34295316,34295410-34295583,34296268-342963... 29 2.3
12_01_0368 + 2815424-2815658,2816898-2817120,2818329-2818680,281... 29 3.0
11_01_0345 + 2579602-2579836,2581262-2581484,2582822-2583173,258... 29 3.0
03_05_0511 + 25056018-25059107 28 4.0
02_04_0148 - 20198407-20201424 27 7.0
04_03_0264 - 13619329-13621708,13621742-13621830 27 9.2
03_06_0088 - 31562596-31563096 27 9.2
>01_05_0199 - 19174971-19175105,19176302-19176628,19176813-19176915,
19178852-19178916,19179941-19180048,19180213-19180305,
19180395-19180442,19180801-19180899,19180980-19181096,
19181186-19181239,19181312-19181404,19181776-19181881,
19182050-19182084,19182173-19182259,19182385-19182462,
19182528-19182596,19182682-19182780,19183644-19183685,
19184498-19184570,19184654-19184982,19185070-19185127,
19185217-19185269,19186075-19186144,19186276-19186337,
19186452-19186540,19186906-19187011,19187110-19187178,
19187295-19187330
Length = 900
Score = 30.7 bits (66), Expect = 0.75
Identities = 18/66 (27%), Positives = 29/66 (43%), Gaps = 1/66 (1%)
Frame = -3
Query: 413 HERGHQPAVTE*RHENDEREQNNLSER-SRAQYVARLELHQRDQQSRHPHRILSKGIEYG 237
H+R H + E DE++ + S R S + +R H D S + H+ K +
Sbjct: 820 HKRHHHDTADDVSSERDEKDDSKKSRRHSSDRKKSRKHTHASDSDSENRHKRHKKDRDSS 879
Query: 236 ERVGSR 219
R G+R
Sbjct: 880 RRNGTR 885
>11_06_0098 -
20068488-20068616,20069039-20069257,20069431-20069606,
20069812-20070034
Length = 248
Score = 29.9 bits (64), Expect = 1.3
Identities = 18/41 (43%), Positives = 25/41 (60%)
Frame = -1
Query: 385 PNNAMKTTRGNRTISASAAARNMLRDWNSTREINSRATHIE 263
PN A TTRG + + A R LR +STR+I +R TH++
Sbjct: 163 PNGAW-TTRGYQNLKAKYFQRANLR--HSTRQIKNRFTHLK 200
>04_03_0258 -
13573730-13573816,13573881-13574666,13575043-13575126,
13575254-13575322,13575324-13576228,13576517-13576784
Length = 732
Score = 29.5 bits (63), Expect = 1.7
Identities = 17/45 (37%), Positives = 25/45 (55%)
Frame = +3
Query: 342 EIVLFPLVVFMALFGYCGLMSPFVYYYFVTWRYASRRNPYTRNTF 476
E L+ V+ L+GY G P +YY ++ SR++P TR TF
Sbjct: 280 ESKLYMTVLPDGLYGYVGSKPPQLYYTYLVDTNKSRKDP-TRVTF 323
>04_01_0488 - 6419731-6420843
Length = 370
Score = 29.5 bits (63), Expect = 1.7
Identities = 13/22 (59%), Positives = 14/22 (63%)
Frame = +2
Query: 209 TSTRGFLLSHHTRYPWTEFDVG 274
TSTRGFLL+HH P VG
Sbjct: 46 TSTRGFLLAHHRHQPSLPLVVG 67
>01_06_1072 +
34295227-34295316,34295410-34295583,34296268-34296322,
34296410-34296679,34296881-34297092,34297276-34297396,
34297674-34297761,34297834-34297912,34298092-34298179,
34298312-34298352,34298477-34298529,34298623-34298779,
34298862-34299053
Length = 539
Score = 29.1 bits (62), Expect = 2.3
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Frame = +2
Query: 95 RVSCSIFLGGQRTLPVLLINLHER-GTKFIGFDADIFVCTSTRGFLLSHHTRY 250
R+S S ++ T + N++ R G G DADI + R F++ HT +
Sbjct: 410 RISVSDYVRVTSTECAKIFNIYPRKGAILEGSDADIIILNPERSFVMGAHTHH 462
>12_01_0368 +
2815424-2815658,2816898-2817120,2818329-2818680,
2819354-2819620
Length = 358
Score = 28.7 bits (61), Expect = 3.0
Identities = 19/49 (38%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Frame = +3
Query: 360 LVVFMALFGYCGLMSPFVYYYF-VTWRYASRRNPYTRNTFRELRVLAEG 503
+VV A+ G C L+S F Y F V A Y R TF EL G
Sbjct: 39 VVVSYAIAGLCALLSAFCYTEFAVDMPVAGGAFSYLRVTFGELAAFLTG 87
>11_01_0345 +
2579602-2579836,2581262-2581484,2582822-2583173,
2583894-2584125,2584683-2585266
Length = 541
Score = 28.7 bits (61), Expect = 3.0
Identities = 19/49 (38%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Frame = +3
Query: 360 LVVFMALFGYCGLMSPFVYYYF-VTWRYASRRNPYTRNTFRELRVLAEG 503
+VV A+ G C L+S F Y F V A Y R TF EL G
Sbjct: 39 VVVSYAIAGLCALLSAFCYTEFAVDMPVAGGAFSYLRVTFGELAAFLTG 87
>03_05_0511 + 25056018-25059107
Length = 1029
Score = 28.3 bits (60), Expect = 4.0
Identities = 28/108 (25%), Positives = 47/108 (43%)
Frame = -1
Query: 352 RTISASAAARNMLRDWNSTREINSRATHIEFCPRVSSMVRE*EAACRSANKNIGVKTNKF 173
R I+ +AA + + I+S HI+FC VSS R ++A + GV
Sbjct: 59 RAITMKSAAVVLHHGGHRVNLIDSPG-HIDFCSEVSSAARLSDSALILVDAVEGVHIQTH 117
Query: 172 GATFMKINE*NR*CALSSKKNRARNSLEIEISLAGIRWCNLSADVAAL 29
A E R C + +K +R + L + + A R + +DV ++
Sbjct: 118 AALRQAFLERLRPCLVLNKLDRLISELHLTPAEAYTRLHRIISDVNSI 165
>02_04_0148 - 20198407-20201424
Length = 1005
Score = 27.5 bits (58), Expect = 7.0
Identities = 27/106 (25%), Positives = 44/106 (41%), Gaps = 1/106 (0%)
Frame = -1
Query: 343 SASAAARNMLRDWNSTR-EINSRATHIEFCPRVSSMVRE*EAACRSANKNIGVKTNKFGA 167
SAS A R D R + HI+FC VS+ R ++A + GV+ A
Sbjct: 72 SASIALRRGGEDGGGHRVHLIDSPGHIDFCSEVSAAARLADSALVLVDAAEGVRVQTHAA 131
Query: 166 TFMKINE*NR*CALSSKKNRARNSLEIEISLAGIRWCNLSADVAAL 29
E R C + +K +R L + + A R + ++V ++
Sbjct: 132 LRQAFVERLRPCLVLNKVDRLVAELRLTPAEAHARLRRIVSEVNSI 177
>04_03_0264 - 13619329-13621708,13621742-13621830
Length = 822
Score = 27.1 bits (57), Expect = 9.2
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = +3
Query: 342 EIVLFPLVVFMALFGYCGLMSPFVYYYFVTWRYASRRNPYTRNTF 476
E L+ V+ L+ Y G P +YY ++ SR++P TR TF
Sbjct: 192 ESKLYMTVLPDGLYAYVGSKPPQLYYKYLVDTNKSRKDP-TRVTF 235
>03_06_0088 - 31562596-31563096
Length = 166
Score = 27.1 bits (57), Expect = 9.2
Identities = 19/45 (42%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = +2
Query: 245 RYPWTE-FDVGGATVDLSGGVPVSQHIARGCAR*DCSVPSRRFHG 376
R+ W E + GGA S GVP H+ RGC + SRRF G
Sbjct: 124 RWAWHEGWPAGGA----SAGVP---HVGRGCVVVEHRCVSRRFAG 161
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,758,371
Number of Sequences: 37544
Number of extensions: 260110
Number of successful extensions: 927
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 907
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 927
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1154538620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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