Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0003_K18
(561 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2 |Schiz... 27 1.4
SPAC24C9.12c |||glycine hydroxymethyltransferase |Schizosaccharo... 26 4.4
SPAC18G6.04c |shm2||serine hydroxymethyltransferase Shm2 |Schizo... 25 5.8
SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr... 25 5.8
SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter family|Sch... 25 7.6
SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange facto... 25 7.6
SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A... 25 7.6
SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual 25 7.6
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 25 7.6
SPCC18B5.10c |||TREX complex subunit Tex1 |Schizosaccharomyces p... 25 7.6
>SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1273
Score = 27.5 bits (58), Expect = 1.4
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = -3
Query: 109 TELVRSRETSVVTIPTDTAPSAVDAP 32
TEL +S + +V+ IP TAP+ V P
Sbjct: 296 TELSKSVDNAVLPIPPTTAPAVVSPP 321
>SPAC24C9.12c |||glycine hydroxymethyltransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 467
Score = 25.8 bits (54), Expect = 4.4
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +2
Query: 104 LGGIFGAGVIVAHYHPGSVITTTVH 178
+ G+ AGVI + + V+TTT H
Sbjct: 218 ISGLVSAGVIPSPFEYADVVTTTTH 242
>SPAC18G6.04c |shm2||serine hydroxymethyltransferase Shm2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 472
Score = 25.4 bits (53), Expect = 5.8
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = +2
Query: 104 LGGIFGAGVIVAHYHPGSVITTTVH 178
+ G+ AGVI + + ++TTT H
Sbjct: 224 ISGLVAAGVIPSPFEYADIVTTTTH 248
>SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 872
Score = 25.4 bits (53), Expect = 5.8
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = -1
Query: 441 PHPSPCVPLLQTPQLLPAVYFHCNTQCSQTTPA 343
P +P V LQT +LL Y NT S +TP+
Sbjct: 178 PSTAPLVRALQTIELLLKKYEVSNTTKSSSTPS 210
>SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter
family|Schizosaccharomyces pombe|chr 3|||Manual
Length = 791
Score = 25.0 bits (52), Expect = 7.6
Identities = 11/34 (32%), Positives = 17/34 (50%)
Frame = +3
Query: 270 SWKRVEPSIILSEVASSIT*TIASQLAWSANTAC 371
SWK V P+++L A + T + W+A C
Sbjct: 679 SWKHVNPALLLGGAAQIPSVTGINYSTWAAVAFC 712
>SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange factor
Sec74|Schizosaccharomyces pombe|chr 1|||Manual
Length = 928
Score = 25.0 bits (52), Expect = 7.6
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = -3
Query: 442 STSQPLCAITADSPVITSRVFPLQHAVFAD 353
S S+P IT+D+P ++S+ P+ A D
Sbjct: 50 SKSKPKVTITSDTPKVSSQHSPVSSAYTGD 79
>SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 110
Score = 25.0 bits (52), Expect = 7.6
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = -3
Query: 118 KDTTELVRSRETSVVTIPTDTAPSAVDAPLVPHAA 14
KD EL+ + + T+PT A SA A AA
Sbjct: 49 KDIDELIAAGNEKLATVPTGGAASAAPAAAAGGAA 83
>SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 738
Score = 25.0 bits (52), Expect = 7.6
Identities = 9/27 (33%), Positives = 15/27 (55%)
Frame = -2
Query: 473 YRNTLRTAPDFHIPALVCHYCRLPSYY 393
Y L T+P+ H ++ + LP+YY
Sbjct: 256 YSKDLSTSPEAHRTSIYSYSANLPNYY 282
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 25.0 bits (52), Expect = 7.6
Identities = 23/96 (23%), Positives = 44/96 (45%)
Frame = +3
Query: 99 TSSVVSLEPGSSLPTTTPAR*SPPQFI*RHHTSDTGSLNCAQIRKSTTRNASTGTCCSWK 278
TSS S P SS TTT + S +S + S + + S++ ++S+ + S
Sbjct: 136 TSSSSSSSPSSSSTTTTTSPSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 195
Query: 279 RVEPSIILSEVASSIT*TIASQLAWSANTACCSGNT 386
S S + IT + +S + S++++ S ++
Sbjct: 196 SSSSSSSSSSSSVPITSSTSSSHSSSSSSSSSSSSS 231
>SPCC18B5.10c |||TREX complex subunit Tex1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 309
Score = 25.0 bits (52), Expect = 7.6
Identities = 8/22 (36%), Positives = 15/22 (68%)
Frame = -3
Query: 520 VSYSVKTIEFRYANRYIGTRSE 455
+ Y ++T+ F Y +RY+ + SE
Sbjct: 235 MDYPIRTLSFSYDSRYLASGSE 256
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,543,013
Number of Sequences: 5004
Number of extensions: 57070
Number of successful extensions: 185
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 185
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 236012634
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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