Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_K17
         (398 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC577.02 |rpl3801|rpl38-1|60S ribosomal protein L38|Schizosacc...    96   2e-21
SPAC30D11.12 |rpl3802|rpl38-2, rps38|60S ribosomal protein L38|S...    90   1e-19
SPAC26F1.04c |etr1||enoyl-[acyl-carrier protein] reductase|Schiz...    31   0.050
SPAC1F8.04c |||hydrolase |Schizosaccharomyces pombe|chr 1|||Manual     27   0.81 
SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein Pkl1|S...    25   3.3  
SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces pomb...    25   3.3  
SPBC36.11 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||M...    25   4.3  
SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces ...    25   5.7  
SPCC622.09 |htb1||histone H2B |Schizosaccharomyces pombe|chr 3||...    24   7.6  
SPBC649.02 |rps1902|rps19-2, rps19|40S ribosomal protein S19|Sch...    24   10.0 
SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit Srb9...    24   10.0 
SPBC21C3.13 |rps1901|rps19-1|40S ribosomal protein S19|Schizosac...    24   10.0 

>SPBC577.02 |rpl3801|rpl38-1|60S ribosomal protein
           L38|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 74

 Score = 96.3 bits (229), Expect = 2e-21
 Identities = 47/70 (67%), Positives = 57/70 (81%), Gaps = 1/70 (1%)
 Frame = +2

Query: 167 MPREIKDIKDFLLKARRKDAKSVKIKKNP-ENVKFKVRCSRFLYTLVITDKEKAEKLKQS 343
           MPR+I DIK FL  ARRKDA S +IKKN  ++VKFK+RCS++LYTLV+ D +KAEKL+QS
Sbjct: 1   MPRQISDIKQFLEIARRKDATSARIKKNTNKDVKFKLRCSKYLYTLVVADAKKAEKLRQS 60

Query: 344 LPPGLQVKEV 373
           LPP L V EV
Sbjct: 61  LPPDLTVTEV 70


>SPAC30D11.12 |rpl3802|rpl38-2, rps38|60S ribosomal protein
           L38|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 74

 Score = 90.2 bits (214), Expect = 1e-19
 Identities = 44/70 (62%), Positives = 53/70 (75%), Gaps = 1/70 (1%)
 Frame = +2

Query: 167 MPREIKDIKDFLLKARRKDAKSVKIKKNPEN-VKFKVRCSRFLYTLVITDKEKAEKLKQS 343
           MPR++ DIK FL  A R DA S ++KKN    VKFK+RCSR+LYTLV+ D +KAEKL+QS
Sbjct: 1   MPRQVTDIKLFLQLAHRGDATSARVKKNQNKAVKFKLRCSRYLYTLVVADAKKAEKLRQS 60

Query: 344 LPPGLQVKEV 373
           LPP L V EV
Sbjct: 61  LPPALTVTEV 70


>SPAC26F1.04c |etr1||enoyl-[acyl-carrier protein]
           reductase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 372

 Score = 31.5 bits (68), Expect = 0.050
 Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 3/53 (5%)
 Frame = +2

Query: 227 KSVKIKKN-PENVKFKVRCSRFLYTLVITDKEKAEK--LKQSLPPGLQVKEVK 376
           KS+ + +N P+  K K +      T+VITD+E  ++  +KQ +P  +Q  EVK
Sbjct: 200 KSINVVRNRPDIEKLKEQLKSLGATIVITDEELMDRKTMKQKVPEWIQGGEVK 252


>SPAC1F8.04c |||hydrolase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 463

 Score = 27.5 bits (58), Expect = 0.81
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +1

Query: 283 SVPVHPRHHGQGEGRETETEFTSRSPG*GSE 375
           +V  H + HG+G GR  E  F +R+PG  SE
Sbjct: 181 AVESHSKFHGKGNGR-VEIWFGARTPGGVSE 210


>SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein
           Pkl1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 832

 Score = 25.4 bits (53), Expect = 3.3
 Identities = 9/28 (32%), Positives = 18/28 (64%)
 Frame = -2

Query: 211 RFQQKIFDILDFTRHDEVCNVAHTVKQN 128
           RF++KI D+L+  + +E   ++H   +N
Sbjct: 319 RFKEKILDLLEMKQQEENDRISHIEYEN 346


>SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 814

 Score = 25.4 bits (53), Expect = 3.3
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +2

Query: 146 SDITHFIMPREIKDIKDFLLKARRKDAKS 232
           SD+  +   R++KD  D + K  RKD KS
Sbjct: 418 SDLKKYEKSRKLKDYIDDIRKGYRKDLKS 446


>SPBC36.11 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 343

 Score = 25.0 bits (52), Expect = 4.3
 Identities = 13/60 (21%), Positives = 28/60 (46%)
 Frame = +2

Query: 98  PIIGLYLKLFILFYSVSDITHFIMPREIKDIKDFLLKARRKDAKSVKIKKNPENVKFKVR 277
           PI+G+   L +L      + HF   + + + ++F  +   + ++   ++KN E  K   R
Sbjct: 101 PIVGVLGGLIVLVIIFYCLRHFKRKKFLAEQQEFERQFEEEKSRLAAVRKNTEQEKMGYR 160


>SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 905

 Score = 24.6 bits (51), Expect = 5.7
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = +2

Query: 167 MPREIKDIKDFLLKARRKDAKSVKIKKNPENVKFKVRCSR 286
           + RE  +     LKA RK+A+ V+ +  P   K+++  SR
Sbjct: 433 LEREKDEASKERLKAARKEAEQVEEETRPIREKYELEKSR 472


>SPCC622.09 |htb1||histone H2B |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 126

 Score = 24.2 bits (50), Expect = 7.6
 Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 5/55 (9%)
 Frame = -3

Query: 333 SFSAFSLSVMTRVY-----RNREQRTLNXXXXXXXXXFTDLASFLRAFNKKSLIS 184
           ++S++   V+ +V+      N+  R LN             AS L A+NKKS IS
Sbjct: 36  TYSSYIYKVLKQVHPDTGISNQAMRILNSFVNDIFERIATEASKLAAYNKKSTIS 90


>SPBC649.02 |rps1902|rps19-2, rps19|40S ribosomal protein
           S19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 143

 Score = 23.8 bits (49), Expect = 10.0
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +1

Query: 259 CKVQGPLLSVPVHPRHHGQGEG 324
           CKV G  ++  + P HH  G G
Sbjct: 76  CKVYGGSVNRGMRPSHHRDGSG 97


>SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit
           Srb9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1223

 Score = 23.8 bits (49), Expect = 10.0
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +2

Query: 182 KDIKDFLLKARRKDAKSVKIKKNPEN 259
           K I+D+L K    ++ +V + K+PEN
Sbjct: 684 KPIRDYLEKILLGESSAVFLSKSPEN 709


>SPBC21C3.13 |rps1901|rps19-1|40S ribosomal protein
           S19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 144

 Score = 23.8 bits (49), Expect = 10.0
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +1

Query: 259 CKVQGPLLSVPVHPRHHGQGEG 324
           CKV G  ++  + P HH  G G
Sbjct: 76  CKVYGGSVNRGMRPSHHRDGSG 97


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,439,671
Number of Sequences: 5004
Number of extensions: 25425
Number of successful extensions: 70
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 68
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 134126124
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)