Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_K16
         (520 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_03_0132 + 14711645-14711839,14712641-14712970,14713689-147137...    32   0.32 
01_06_1740 - 39575614-39576981                                         28   5.2  
11_04_0463 - 17980031-17980189,17980269-17980536,17980620-179807...    27   6.8  

>03_03_0132 +
           14711645-14711839,14712641-14712970,14713689-14713751,
           14713833-14713906,14714004-14714099,14714705-14714759,
           14714867-14714971,14715054-14715135,14715450-14715562,
           14715717-14716118
          Length = 504

 Score = 31.9 bits (69), Expect = 0.32
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = +1

Query: 124 GYNRVCLVTNIYIIYTDYDMVINSLFYLCK 213
           G+ ++ L TN  I+YT    VIN+  YLCK
Sbjct: 70  GFQKLYLPTNSIIVYTYVLFVINAAHYLCK 99


>01_06_1740 - 39575614-39576981
          Length = 455

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 12/20 (60%), Positives = 15/20 (75%)
 Frame = +3

Query: 78  SPSTSSVARTPANSSRLQPR 137
           SPS+ + ARTPA S  L+PR
Sbjct: 238 SPSSEAPARTPAKSPMLRPR 257


>11_04_0463 -
           17980031-17980189,17980269-17980536,17980620-17980758,
           17981498-17981588
          Length = 218

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -2

Query: 477 KNLKDRSFKTVPVNCSDLFYIPLIFCYY*ILRF 379
           K+LKD+  K  P N SDL + P ++  Y  + F
Sbjct: 64  KHLKDKLKKNPPANYSDLLWEPSLWTTYVKIHF 96


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,520,473
Number of Sequences: 37544
Number of extensions: 164131
Number of successful extensions: 335
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 334
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 335
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1130733700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)