Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_K16
         (520 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80448-7|AAB37820.1|  260|Caenorhabditis elegans Hypothetical pr...    28   4.6  
U39648-3|AAM15603.1|  434|Caenorhabditis elegans Hypothetical pr...    27   6.1  

>U80448-7|AAB37820.1|  260|Caenorhabditis elegans Hypothetical
           protein F59A3.7 protein.
          Length = 260

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +1

Query: 112 QTHPGYNRVCLVTNIYIIYTDYDMVINSLFYLCK 213
           +TH    RV    NI +IY  ++M++ SLF + K
Sbjct: 15  ETHDTIFRVVSAKNILLIYILWNMILASLFLVLK 48


>U39648-3|AAM15603.1|  434|Caenorhabditis elegans Hypothetical
           protein T13C5.2 protein.
          Length = 434

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -3

Query: 53  NRNYVHDVCCNWMSRSC 3
           N NY H+ CCN+ + SC
Sbjct: 187 NYNYHHNNCCNYHNHSC 203


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,997,077
Number of Sequences: 27780
Number of extensions: 175751
Number of successful extensions: 407
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 394
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 407
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1007108110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)