Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_K14
         (402 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0406 + 3607088-3607231,3608900-3608996,3609121-3609185,361...    30   0.79 
02_04_0195 + 20830849-20830950,20831498-20831690,20831800-208319...    29   1.0  
12_01_0486 + 3854889-3855014,3855897-3856089,3856206-3856310,385...    29   1.4  
11_01_0518 + 4057428-4057538,4059609-4059801,4059921-4060025,406...    29   1.4  
04_04_0345 - 24542869-24543540,24543725-24543805,24543845-245439...    27   4.2  
06_01_1131 - 9344030-9344680                                           24   9.0  

>08_01_0406 +
           3607088-3607231,3608900-3608996,3609121-3609185,
           3610268-3610372,3610492-3610554,3610801-3610834,
           3610921-3611043,3611269-3611362,3611452-3611497,
           3611692-3611759,3611843-3611891,3612032-3612097,
           3612443-3612475
          Length = 328

 Score = 29.9 bits (64), Expect = 0.79
 Identities = 14/48 (29%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
 Frame = +2

Query: 158 WIPPILSIFFLIYSSVHFPLQFTLTYIHFFR**KQNTL-TFIHSFVFF 298
           W+  +L +F +IY+    PL + L Y   +   + +++ TF+  FVF+
Sbjct: 209 WLDVVLFLFAIIYAIFGCPLSYILWYRPLYSAMRTDSMVTFVQFFVFY 256


>02_04_0195 +
           20830849-20830950,20831498-20831690,20831800-20831904,
           20832147-20832235,20832316-20832468,20832628-20832762,
           20832849-20833015,20833519-20833613,20833707-20834080,
           20834177-20834599
          Length = 611

 Score = 29.5 bits (63), Expect = 1.0
 Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
 Frame = +1

Query: 142 VDRYFLDSTDPXXXXXXXXXCTFSTSIYAYIYT-FFPLIKTKYSNFYSFICFF 297
           V  YFL + +             ST++Y Y+Y+ ++  +KTK S F+    +F
Sbjct: 496 VGTYFLLNAENYHWQWTSFFSAASTAVYVYLYSVYYYHVKTKMSGFFQTSFYF 548


>12_01_0486 +
           3854889-3855014,3855897-3856089,3856206-3856310,
           3856541-3856629,3856720-3856872,3857047-3857181,
           3857293-3857459,3858193-3858287,3858495-3858868,
           3859101-3859374,3859464-3859531
          Length = 592

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
 Frame = +1

Query: 142 VDRYFLDSTDPXXXXXXXXXCTFSTSIYAYIYT-FFPLIKTKYSNFYSFICFF 297
           V  YFL + +             ST++Y Y+Y+ ++  +KTK S F+    +F
Sbjct: 504 VGTYFLLNAENYHWQWTSFLSAASTALYVYLYSIYYYHVKTKMSGFFQTSFYF 556


>11_01_0518 +
           4057428-4057538,4059609-4059801,4059921-4060025,
           4060259-4060347,4060424-4060576,4060754-4060888,
           4061241-4061407,4062129-4062223,4062367-4062740,
           4062903-4063176,4063806-4063822
          Length = 570

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
 Frame = +1

Query: 142 VDRYFLDSTDPXXXXXXXXXCTFSTSIYAYIYT-FFPLIKTKYSNFYSFICFF 297
           V  YFL + +             ST++Y Y+Y+ ++  +KTK S F+    +F
Sbjct: 499 VGTYFLLNAENYHWQWTSFFSAASTALYVYLYSIYYYHVKTKMSGFFQTSFYF 551


>04_04_0345 -
           24542869-24543540,24543725-24543805,24543845-24543910,
           24543991-24544098,24545101-24545436,24545516-24545586,
           24546105-24546252
          Length = 493

 Score = 27.5 bits (58), Expect = 4.2
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +2

Query: 8   YFSNSMSPLPWFLNSFVY 61
           +FS  M P+PW +NS +Y
Sbjct: 384 FFSPGMGPVPWAVNSEIY 401


>06_01_1131 - 9344030-9344680
          Length = 216

 Score = 23.8 bits (49), Expect(2) = 9.0
 Identities = 9/28 (32%), Positives = 18/28 (64%)
 Frame = +2

Query: 296 F*IRYK*NVICTEHIKRGRSRGHQLVLY 379
           F ++YK    C E +K+G ++GH + ++
Sbjct: 77  FLLKYKHRRHCEETVKQGFAKGHGIEVH 104



 Score = 21.0 bits (42), Expect(2) = 9.0
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +2

Query: 200 SVHFPLQFTLTYIH 241
           S+HFP  F L Y H
Sbjct: 70  SLHFPEAFLLKYKH 83


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,898,404
Number of Sequences: 37544
Number of extensions: 144878
Number of successful extensions: 266
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 259
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 266
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 694697784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)