Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0003_K14
(402 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z83117-6|CAN86902.1| 1931|Caenorhabditis elegans Hypothetical pr... 29 1.2
Z83117-5|CAN86901.1| 1971|Caenorhabditis elegans Hypothetical pr... 29 1.2
Z83117-4|CAB05572.2| 2032|Caenorhabditis elegans Hypothetical pr... 29 1.2
Z80219-10|CAN86596.1| 1931|Caenorhabditis elegans Hypothetical p... 29 1.2
Z80219-9|CAN86595.1| 1971|Caenorhabditis elegans Hypothetical pr... 29 1.2
Z80219-8|CAB02303.2| 2032|Caenorhabditis elegans Hypothetical pr... 29 1.2
AJ276020-1|CAC81668.1| 1971|Caenorhabditis elegans putative TRP ... 29 1.2
Z98851-1|CAB11539.2| 327|Caenorhabditis elegans Hypothetical pr... 29 1.7
AF038606-7|AAB92021.1| 344|Caenorhabditis elegans Hypothetical ... 29 1.7
AC024775-3|AAK68454.1| 580|Caenorhabditis elegans Hypothetical ... 28 2.9
Z70781-2|CAA94832.1| 396|Caenorhabditis elegans Hypothetical pr... 27 6.7
>Z83117-6|CAN86902.1| 1931|Caenorhabditis elegans Hypothetical protein
T01H8.5d protein.
Length = 1931
Score = 29.1 bits (62), Expect = 1.2
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = +2
Query: 155 FWIPPILSIFFLIYSSVHFPLQFTLTYIHFF 247
+WIPP+L FFL+ +++ + H F
Sbjct: 1428 YWIPPLLMTFFLLIANILLMSMLIAIFNHIF 1458
>Z83117-5|CAN86901.1| 1971|Caenorhabditis elegans Hypothetical protein
T01H8.5c protein.
Length = 1971
Score = 29.1 bits (62), Expect = 1.2
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = +2
Query: 155 FWIPPILSIFFLIYSSVHFPLQFTLTYIHFF 247
+WIPP+L FFL+ +++ + H F
Sbjct: 1468 YWIPPLLMTFFLLIANILLMSMLIAIFNHIF 1498
>Z83117-4|CAB05572.2| 2032|Caenorhabditis elegans Hypothetical protein
T01H8.5a protein.
Length = 2032
Score = 29.1 bits (62), Expect = 1.2
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = +2
Query: 155 FWIPPILSIFFLIYSSVHFPLQFTLTYIHFF 247
+WIPP+L FFL+ +++ + H F
Sbjct: 1529 YWIPPLLMTFFLLIANILLMSMLIAIFNHIF 1559
>Z80219-10|CAN86596.1| 1931|Caenorhabditis elegans Hypothetical
protein T01H8.5d protein.
Length = 1931
Score = 29.1 bits (62), Expect = 1.2
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = +2
Query: 155 FWIPPILSIFFLIYSSVHFPLQFTLTYIHFF 247
+WIPP+L FFL+ +++ + H F
Sbjct: 1428 YWIPPLLMTFFLLIANILLMSMLIAIFNHIF 1458
>Z80219-9|CAN86595.1| 1971|Caenorhabditis elegans Hypothetical protein
T01H8.5c protein.
Length = 1971
Score = 29.1 bits (62), Expect = 1.2
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = +2
Query: 155 FWIPPILSIFFLIYSSVHFPLQFTLTYIHFF 247
+WIPP+L FFL+ +++ + H F
Sbjct: 1468 YWIPPLLMTFFLLIANILLMSMLIAIFNHIF 1498
>Z80219-8|CAB02303.2| 2032|Caenorhabditis elegans Hypothetical protein
T01H8.5a protein.
Length = 2032
Score = 29.1 bits (62), Expect = 1.2
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = +2
Query: 155 FWIPPILSIFFLIYSSVHFPLQFTLTYIHFF 247
+WIPP+L FFL+ +++ + H F
Sbjct: 1529 YWIPPLLMTFFLLIANILLMSMLIAIFNHIF 1559
>AJ276020-1|CAC81668.1| 1971|Caenorhabditis elegans putative TRP
homologous cationchannel protein.
Length = 1971
Score = 29.1 bits (62), Expect = 1.2
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = +2
Query: 155 FWIPPILSIFFLIYSSVHFPLQFTLTYIHFF 247
+WIPP+L FFL+ +++ + H F
Sbjct: 1468 YWIPPLLMTFFLLIANILLMSMLIAIFNHIF 1498
>Z98851-1|CAB11539.2| 327|Caenorhabditis elegans Hypothetical
protein H12I19.1 protein.
Length = 327
Score = 28.7 bits (61), Expect = 1.7
Identities = 12/29 (41%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
Frame = +3
Query: 57 FIIPLTHHYFKTTEHIGIGLI--PFNAVF 137
F+ P+T+H+F+ T++ IG I P N F
Sbjct: 60 FVFPITNHFFEMTKNAFIGYIYFPVNCFF 88
>AF038606-7|AAB92021.1| 344|Caenorhabditis elegans Hypothetical
protein C04C3.6 protein.
Length = 344
Score = 28.7 bits (61), Expect = 1.7
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +1
Query: 202 CTFSTSIYAYIYTFFPLIKTKYSNFYSFIC 291
C ++ A I+ F L K K SN+Y F+C
Sbjct: 35 CVSVVTLPALIFMFIVLRKYKKSNYYHFLC 64
>AC024775-3|AAK68454.1| 580|Caenorhabditis elegans Hypothetical
protein Y41D4A.4 protein.
Length = 580
Score = 27.9 bits (59), Expect = 2.9
Identities = 13/50 (26%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Frame = +1
Query: 151 YFLDSTDPXXXXXXXXXCTFSTSIYAYIYT-FFPLIKTKYSNFYSFICFF 297
YFL + + C ST+ Y Y+Y+ ++ KTK + + +F
Sbjct: 495 YFLLNAEDYRWRWTSFACGASTAFYVYMYSMYYFFFKTKMYGLFQTVFYF 544
>Z70781-2|CAA94832.1| 396|Caenorhabditis elegans Hypothetical
protein F57A8.4 protein.
Length = 396
Score = 26.6 bits (56), Expect = 6.7
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +2
Query: 32 LPWFLNSFVYYSFDAPLFQNY 94
LP F F+ Y D PL++NY
Sbjct: 168 LPAFFEYFITYRPDCPLYENY 188
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,540,147
Number of Sequences: 27780
Number of extensions: 161155
Number of successful extensions: 383
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 376
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 383
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 630384202
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -