Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_K12
         (449 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1450.04 |tef5||translation elongation factor EF-1 beta subun...    81   1e-16
SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein Pop1...    26   2.3  
SPBC32F12.10 |||phosphoglucomutase |Schizosaccharomyces pombe|ch...    26   3.1  
SPBC13G1.07 |||palmitoyltransferase|Schizosaccharomyces pombe|ch...    25   7.1  
SPCC70.10 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||M...    25   7.1  
SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase Shk1|Schizosacc...    24   9.4  

>SPCC1450.04 |tef5||translation elongation factor EF-1 beta subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 214

 Score = 80.6 bits (190), Expect = 1e-16
 Identities = 49/140 (35%), Positives = 72/140 (51%), Gaps = 1/140 (0%)
 Frame = +3

Query: 30  MALGDVKTAQGLNELNQYLAERSYVSGYTPSQADIKVFEQVGKVP-AASLPHVLRWYSHI 206
           M   D+ +  GL +LN +L ++S++ GY PSQAD  VF+ VG  P  A  P+  RWY  I
Sbjct: 1   MGFSDLTSDAGLKQLNDFLLDKSFIEGYEPSQADAVVFKAVGVAPDTAKYPNGARWYKQI 60

Query: 207 ASYTPAERKTWSEGVSXXXXXXXXXXXXXXSNXXXXXXXXLFGSGDEEEQDAEAARVREE 386
           A+Y  A     ++ VS               +        LFGS  +EE+D EA R++ E
Sbjct: 61  ATYDLATLPGTAKEVSAYGPEGAAAAEEDEID--------LFGS--DEEEDPEAERIKAE 110

Query: 387 RLKAYADQKSKKPRSYCKVL 446
           R+  Y  +K+ KP++  K L
Sbjct: 111 RVAEYNKKKAAKPKAVHKSL 130


>SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein
           Pop1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 775

 Score = 26.2 bits (55), Expect = 2.3
 Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = +1

Query: 283 PLLHPPXXXXXXXSIFLALVMRKSRMQKQPESVKN-VLRHMLTK 411
           P +HP        +  L L    S  +K PESV+  +L H+L++
Sbjct: 236 PSIHPSNHLSSQKNAVLKLAQLISSFEKLPESVRQYLLFHLLSR 279


>SPBC32F12.10 |||phosphoglucomutase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 554

 Score = 25.8 bits (54), Expect = 3.1
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = +3

Query: 342 DEEEQDAEAARVREERLKAYADQKSK 419
           D EE + EAA    +R++A AD KSK
Sbjct: 424 DYEELENEAAGKVMDRMRAIADDKSK 449


>SPBC13G1.07 |||palmitoyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 356

 Score = 24.6 bits (51), Expect = 7.1
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = -3

Query: 198 CTTSKHEVGWQQVLCRLAQIL*YQLEKECIQTHNFFQLN 82
           C+T K E   +   CRL  I   + +  CI  +N   LN
Sbjct: 160 CSTCKFEKPARSKHCRLCNICVEKFDHHCIWINNCVGLN 198


>SPCC70.10 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 155

 Score = 24.6 bits (51), Expect = 7.1
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = +1

Query: 199 ATSHRTPLLNAKPGQRELAH*QLELNPRPLLHPP 300
           AT+  TP   A P   E  + +   +P P+  PP
Sbjct: 118 ATASNTPQNEASPAATEAVNHERPASPPPVYRPP 151


>SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase
           Shk1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 658

 Score = 24.2 bits (50), Expect = 9.4
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -2

Query: 262 VNGLTPSDQVLRSAGVYDAMWLY 194
           V+G+T S+QV     V DAM  Y
Sbjct: 181 VSGITKSEQVQHPQAVLDAMAFY 203


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,530,631
Number of Sequences: 5004
Number of extensions: 24426
Number of successful extensions: 73
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 70
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 166231220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)