Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0003_K12
(449 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_04_0016 + 16461542-16461566,16462701-16462732,16463015-164631... 65 3e-11
07_03_1580 + 27888275-27888360,27888755-27888871,27888964-278890... 62 2e-10
07_03_1260 - 25260872-25261101,25261199-25261312,25261473-252615... 55 2e-08
01_06_1167 - 35062766-35062870,35063165-35063228,35063647-350637... 36 0.020
01_07_0080 - 40955222-40955676,40956123-40956171,40956282-40956443 29 1.7
08_02_0695 + 20122838-20122949,20123238-20123335,20123520-201236... 27 5.3
08_01_0958 + 9532423-9533202 27 7.0
04_04_0464 - 25405629-25405665,25406644-25406710,25408112-254083... 27 7.0
02_05_0672 + 30775458-30775523,30775594-30775662,30775748-307757... 27 7.0
02_03_0126 - 15536727-15537353 27 9.2
>03_04_0016 +
16461542-16461566,16462701-16462732,16463015-16463100,
16463189-16463305,16463399-16463474,16463695-16463818,
16464482-16464595,16464700-16464947
Length = 273
Score = 64.9 bits (151), Expect = 3e-11
Identities = 42/133 (31%), Positives = 64/133 (48%), Gaps = 5/133 (3%)
Frame = +3
Query: 30 MALGDVKTAQGLNELNQYLAERSYVSGYTPSQADIKVFEQVGKVPAASLPHVLRWYSHIA 209
+ L +V + GL +L++YL RSY+SGY S+ D+ VF + PAAS +V RWY HI+
Sbjct: 22 ITLSNVNSEAGLQKLDEYLLTRSYISGYQASKDDMTVFTSLPSAPAASYVNVTRWYDHIS 81
Query: 210 SYTPAERKT-WSEGVSXXXXXXXXXXXXX----XSNXXXXXXXXLFGSGDEEEQDAEAAR 374
+ + T EGV ++ LF G+E E++ +AA
Sbjct: 82 ALLRSSGVTAEGEGVKVESTACSVSPTADQKAPAADEEDDDDVDLF--GEETEEEKKAAE 139
Query: 375 VREERLKAYADQK 413
R +KA +K
Sbjct: 140 ERAAAVKASGKKK 152
>07_03_1580 +
27888275-27888360,27888755-27888871,27888964-27889045,
27889710-27889821,27889958-27890071,27890163-27890326
Length = 224
Score = 62.5 bits (145), Expect = 2e-10
Identities = 41/129 (31%), Positives = 59/129 (45%), Gaps = 2/129 (1%)
Frame = +3
Query: 42 DVKTAQGLNELNQYLAERSYVSGYTPSQADIKVFEQVGKVPAASLPHVLRWYSHIASYTP 221
D+ TA GL L Q+L+ ++YVSG S+ DIKVF V P A P+ RWY +A+
Sbjct: 7 DLHTADGLKALEQHLSGKTYVSGNAISKDDIKVFAAVPSKPGAEFPNAARWYDTVAAALA 66
Query: 222 AERKTWSEGVS--XXXXXXXXXXXXXXSNXXXXXXXXLFGSGDEEEQDAEAARVREERLK 395
+ + GV+ + L GDE E+D +AA +ER
Sbjct: 67 SRFPGKAVGVNLPGGGAASSAAAAAPAAKDADEDDDDLDLFGDETEEDKKAA---DERAA 123
Query: 396 AYADQKSKK 422
+ A K K+
Sbjct: 124 SKASSKKKE 132
>07_03_1260 -
25260872-25261101,25261199-25261312,25261473-25261596,
25261755-25261839,25261917-25262033,25262122-25262207
Length = 251
Score = 55.2 bits (127), Expect = 2e-08
Identities = 38/132 (28%), Positives = 60/132 (45%), Gaps = 8/132 (6%)
Frame = +3
Query: 42 DVKTAQGLNELNQYLAERSYVSGYTPSQADIKVFEQVGKVPAASLPHVLRWYSHI----- 206
+V + GL +L++YL RSY+SGY S D+ V+ P++S +V RW++HI
Sbjct: 7 NVSSEAGLKKLDEYLLTRSYISGYQASNDDLAVYSAFSTAPSSSYTNVARWFTHIDALLR 66
Query: 207 ASYTPAER---KTWSEGVSXXXXXXXXXXXXXXSNXXXXXXXXLFGSGDEEEQDAEAARV 377
S A+ K S V ++ LF G+E E++ +AA
Sbjct: 67 LSGVTADGQGVKVESTAVPSASTPDVADAKAPAADDDDDDDVDLF--GEETEEEKKAAEE 124
Query: 378 REERLKAYADQK 413
R +KA +K
Sbjct: 125 RAAAVKASGKKK 136
>01_06_1167 -
35062766-35062870,35063165-35063228,35063647-35063738,
35064137-35064205,35064322-35064412,35064509-35064732,
35065064-35065180,35065583-35065651,35066172-35066237,
35066335-35066505,35066581-35066661,35067620-35067700
Length = 409
Score = 35.5 bits (78), Expect = 0.020
Identities = 22/57 (38%), Positives = 31/57 (54%), Gaps = 9/57 (15%)
Frame = +3
Query: 63 LNELNQYLAERSYV--SGYTPSQADIKVFEQV-------GKVPAASLPHVLRWYSHI 206
L LNQ L+++S + +G+ PS ADI VF + G+ PHVLRW +I
Sbjct: 76 LGNLNQDLSQKSVLLGNGFKPSVADIVVFATIQVFVSHLGENELQKYPHVLRWMDYI 132
>01_07_0080 - 40955222-40955676,40956123-40956171,40956282-40956443
Length = 221
Score = 29.1 bits (62), Expect = 1.7
Identities = 24/68 (35%), Positives = 33/68 (48%), Gaps = 7/68 (10%)
Frame = +3
Query: 54 AQGLNELNQYLAERSYVSGYTPSQADIKVFEQV---GKVPAASL----PHVLRWYSHIAS 212
AQ L+ + +LA Y++G S AD + K P A L PHV W+ I+S
Sbjct: 145 AQVLDVYDAHLAGSRYLAGNRFSLADANHMSYLLFLSKTPMAELVASRPHVKAWWDDISS 204
Query: 213 YTPAERKT 236
PA +KT
Sbjct: 205 -RPAWKKT 211
>08_02_0695 +
20122838-20122949,20123238-20123335,20123520-20123696,
20123790-20123890,20124049-20124124,20124213-20124272,
20124362-20124546,20124638-20124734,20124817-20124903,
20124989-20125047,20125157-20125248,20125436-20125513,
20125617-20125777,20125880-20126098
Length = 533
Score = 27.5 bits (58), Expect = 5.3
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = +3
Query: 78 QYLAERSYVSGYTPSQADIKVFEQVGKVPAASLPHV 185
QY E + V+GY P + F + VP AS P V
Sbjct: 441 QYFNEYTSVAGYGPVHTGARWFNDMINVPFASKPFV 476
>08_01_0958 + 9532423-9533202
Length = 259
Score = 27.1 bits (57), Expect = 7.0
Identities = 16/38 (42%), Positives = 19/38 (50%)
Frame = +3
Query: 333 GSGDEEEQDAEAARVREERLKAYADQKSKKPRSYCKVL 446
G G +E D AR+ E ADQ SK R CK+L
Sbjct: 197 GGGAGDEDDRVVARLLER-----ADQSSKLERRVCKIL 229
>04_04_0464 -
25405629-25405665,25406644-25406710,25408112-25408373,
25408989-25409198,25409818-25410006,25410087-25410548,
25410889-25410936,25411972-25412301
Length = 534
Score = 27.1 bits (57), Expect = 7.0
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +3
Query: 342 DEEEQDAEAARVREERLKAYADQKS 416
DEEE+++ RV E +AYAD +S
Sbjct: 29 DEEEEESGEGRVLEAWERAYADDRS 53
>02_05_0672 +
30775458-30775523,30775594-30775662,30775748-30775797,
30775869-30775929,30776016-30776381,30776542-30776754,
30776826-30777056,30777502-30777615,30777703-30778495,
30778535-30778905,30779007-30779378,30779448-30780438,
30781068-30781141,30781953-30782030,30782448-30782525
Length = 1308
Score = 27.1 bits (57), Expect = 7.0
Identities = 12/34 (35%), Positives = 22/34 (64%)
Frame = +3
Query: 342 DEEEQDAEAARVREERLKAYADQKSKKPRSYCKV 443
D E++D + R R+++LKA + S+ P +C+V
Sbjct: 884 DSEDKDRQE-RKRQKKLKAMLFELSENPVEFCRV 916
>02_03_0126 - 15536727-15537353
Length = 208
Score = 26.6 bits (56), Expect = 9.2
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = +3
Query: 54 AQGLNELNQYLAERSYVSGYTPSQADIKVFEQVGKVPAASL 176
A G ++NQ LA++S + KV E+ ++ +ASL
Sbjct: 17 ALGAFDVNQMLADKSQYGSFLKLLTQTKVAEETNRLKSASL 57
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,177,384
Number of Sequences: 37544
Number of extensions: 167505
Number of successful extensions: 588
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 579
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 587
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 871620292
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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