Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0003_K09
(522 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein L2|Schizo... 113 2e-26
SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein L2|Schizo... 112 3e-26
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 27 1.7
SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 27 2.2
SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyce... 25 5.2
SPBC9B6.03 |||zinc finger protein|Schizosaccharomyces pombe|chr ... 25 5.2
SPCC126.02c |pku70||Ku domain protein Pku70|Schizosaccharomyces ... 25 5.2
SPBC1718.02 |hop1||linear element associated protein Hop1|Schizo... 25 6.8
SPCC297.06c ||SPCC737.01c|mitochondrial ribosomal protein subuni... 25 6.8
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|... 25 6.8
SPAC25H1.07 |||DUF1620 family protein|Schizosaccharomyces pombe|... 25 6.8
SPCC1753.03c |rec7||meiotic recombination protein Rec7 |Schizosa... 25 6.8
SPBC2F12.05c |||sterol binding ankyrin repeat protein|Schizosacc... 25 9.0
>SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein
L2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 363
Score = 113 bits (271), Expect = 2e-26
Identities = 55/117 (47%), Positives = 78/117 (66%), Gaps = 2/117 (1%)
Frame = +2
Query: 5 GLTRAFRNIPGIEMXXXXXXXXXXXAPGGHLGRFIIWTKSAFDRLDPLFGSWKTPSKEKK 184
G+ +AFRNIPG+E+ APGGHLGRF+IWTKSAF LD +FGS ++ KK
Sbjct: 216 GIVKAFRNIPGVEIVNVRRLNLLQLAPGGHLGRFVIWTKSAFGLLDSVFGSTTEAAQLKK 275
Query: 185 NFNLPQPKMANTDLSRLLKSEEIRKVLRAPN-KRVVRA-TRKLNPLTNTKAMLKLNP 349
N+ LP+ ++N D++RL+ S+EI+ +++A RV RA +K NPL N + +LNP
Sbjct: 276 NYFLPENIISNADVTRLINSDEIQSIVKAAGPSRVKRAHVQKKNPLKNKAVLARLNP 332
>SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein
L2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 363
Score = 112 bits (269), Expect = 3e-26
Identities = 55/117 (47%), Positives = 78/117 (66%), Gaps = 2/117 (1%)
Frame = +2
Query: 5 GLTRAFRNIPGIEMXXXXXXXXXXXAPGGHLGRFIIWTKSAFDRLDPLFGSWKTPSKEKK 184
G+ +AFRNIPG+E+ APGGHLGRF+IWTKSAF LD +FGS ++ KK
Sbjct: 216 GIVKAFRNIPGVEIVNVRRLNLLQLAPGGHLGRFVIWTKSAFGLLDSVFGSTTEVAQLKK 275
Query: 185 NFNLPQPKMANTDLSRLLKSEEIRKVLRAPN-KRVVRA-TRKLNPLTNTKAMLKLNP 349
N+ LP+ ++N D++RL+ S+EI+ +++A RV RA +K NPL N + +LNP
Sbjct: 276 NYFLPENIISNADVTRLINSDEIQSIVKAAGPSRVKRAHVQKKNPLKNKAVLSRLNP 332
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 27.1 bits (57), Expect = 1.7
Identities = 17/51 (33%), Positives = 24/51 (47%)
Frame = +2
Query: 161 KTPSKEKKNFNLPQPKMANTDLSRLLKSEEIRKVLRAPNKRVVRATRKLNP 313
KTPS EK+ P P + N D L +E V + P+ + TR + P
Sbjct: 586 KTPSPEKQKVLSPPPIITNFDKETLASNEAHEAVPQKPS--APQVTRLMAP 634
>SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 647
Score = 26.6 bits (56), Expect = 2.2
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +1
Query: 181 EELQPAPAEDGQHRPQPSAEVRRDPQGPARAQQ 279
EE+Q ED H + E+ R + P RAQQ
Sbjct: 358 EEVQQTVQEDLPHPTAETVEIARFAEQPVRAQQ 390
>SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1210
Score = 25.4 bits (53), Expect = 5.2
Identities = 20/50 (40%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
Frame = +2
Query: 140 DPLFGSWKTPSKEKKNFNLPQPKMANTDLSRL----LKSEEIRKVLRAPN 277
+PLF + KT S ++ L +PK N L RL + SEEI L PN
Sbjct: 971 EPLFVTVKTASTDESRSVLIKPKADNVILFRLKRFIMSSEEIN--LDIPN 1018
>SPBC9B6.03 |||zinc finger protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 293
Score = 25.4 bits (53), Expect = 5.2
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +2
Query: 167 PSKEKKNFNLPQPKMANTDLSRLLKSEEI 253
PS+ K ++P PKM +TD L SE +
Sbjct: 251 PSQPKNAVSVPIPKMDSTDSKGELPSESL 279
>SPCC126.02c |pku70||Ku domain protein Pku70|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 607
Score = 25.4 bits (53), Expect = 5.2
Identities = 16/59 (27%), Positives = 26/59 (44%)
Frame = +2
Query: 134 RLDPLFGSWKTPSKEKKNFNLPQPKMANTDLSRLLKSEEIRKVLRAPNKRVVRATRKLN 310
RL+ +W E+ +PQ K + + LK +EIR+ VV + +LN
Sbjct: 259 RLESAKTNWVYAKGERFAVAVPQSKQVSFATKKELKKDEIRRSYSYGGSSVVFGSDELN 317
>SPBC1718.02 |hop1||linear element associated protein
Hop1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 528
Score = 25.0 bits (52), Expect = 6.8
Identities = 18/85 (21%), Positives = 38/85 (44%)
Frame = +2
Query: 101 RFIIWTKSAFDRLDPLFGSWKTPSKEKKNFNLPQPKMANTDLSRLLKSEEIRKVLRAPNK 280
++I +T + + + L + TPS+ + N + N ++ +R LR
Sbjct: 450 KWIYFTNKSPEMVSYLREKYFTPSRWISHLNFQNYRQENQRVN-------MRSFLRPERM 502
Query: 281 RVVRATRKLNPLTNTKAMLKLNPVR 355
V+ +K++ +NTK + P+R
Sbjct: 503 EVIERPKKVSKTSNTKETDTMKPLR 527
>SPCC297.06c ||SPCC737.01c|mitochondrial ribosomal protein subunit
8|Schizosaccharomyces pombe|chr 3|||Manual
Length = 230
Score = 25.0 bits (52), Expect = 6.8
Identities = 13/58 (22%), Positives = 30/58 (51%)
Frame = +2
Query: 155 SWKTPSKEKKNFNLPQPKMANTDLSRLLKSEEIRKVLRAPNKRVVRATRKLNPLTNTK 328
S+++ K+KK + + + + ++ RL + +E+R + NK+ + KL L +
Sbjct: 169 SFQSRLKQKKQRS--EFRASKREMERLERDQELRNKIEERNKKELETIEKLRELAKAR 224
>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
Sen1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1687
Score = 25.0 bits (52), Expect = 6.8
Identities = 17/59 (28%), Positives = 29/59 (49%)
Frame = +2
Query: 173 KEKKNFNLPQPKMANTDLSRLLKSEEIRKVLRAPNKRVVRATRKLNPLTNTKAMLKLNP 349
K+K + + Q K L++ S E + VL +R T+K LTN+ ++K +P
Sbjct: 730 KQKAHLSADQCKQLANVLTQA--SPEAKTVLEQHRLSEMRKTKKQTELTNSAHVIKPSP 786
>SPAC25H1.07 |||DUF1620 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 885
Score = 25.0 bits (52), Expect = 6.8
Identities = 21/73 (28%), Positives = 32/73 (43%)
Frame = -1
Query: 522 QVLASPLRELLRPDRRVCLR*FDATFLCDGERPQVVPSWTLFXRNRPFPVPSATRGRTGF 343
Q L SP+R +LRP+ + DA+F+ + L R + V T G T F
Sbjct: 765 QALLSPMRPVLRPNEKA----NDASFIPYEPIIPLNDDMVLSYNKRVYGVSQITSGITNF 820
Query: 342 SFNIAFVLVSGFN 304
+ VL +G +
Sbjct: 821 E-STTLVLSTGLD 832
>SPCC1753.03c |rec7||meiotic recombination protein Rec7
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 339
Score = 25.0 bits (52), Expect = 6.8
Identities = 16/53 (30%), Positives = 26/53 (49%)
Frame = +2
Query: 119 KSAFDRLDPLFGSWKTPSKEKKNFNLPQPKMANTDLSRLLKSEEIRKVLRAPN 277
K F++L +F K+ S EKK FN Q + N+ L+ + + + PN
Sbjct: 108 KVEFEKLGLVFKDAKS-SSEKKQFNNSQSQSNNSQELSLMNNAYNKSSAQQPN 159
>SPBC2F12.05c |||sterol binding ankyrin repeat
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1310
Score = 24.6 bits (51), Expect = 9.0
Identities = 9/26 (34%), Positives = 13/26 (50%)
Frame = +1
Query: 199 PAEDGQHRPQPSAEVRRDPQGPARAQ 276
P+ +H+PQPS + D P Q
Sbjct: 596 PSFSSEHKPQPSLKTTTDVSSPETKQ 621
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,897,909
Number of Sequences: 5004
Number of extensions: 38134
Number of successful extensions: 152
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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