Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_K08
         (415 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_1184 - 9430623-9430658,9430945-9431013,9431104-9431270,943...    30   0.64 
11_06_0102 + 20112731-20112928,20113314-20113514,20113606-201136...    29   1.5  
02_01_0319 - 2148788-2148892,2149474-2149557,2149643-2149723,215...    29   1.5  

>01_01_1184 -
           9430623-9430658,9430945-9431013,9431104-9431270,
           9431596-9431693,9431790-9431929,9432911-9433120,
           9434314-9434832
          Length = 412

 Score = 30.3 bits (65), Expect = 0.64
 Identities = 11/28 (39%), Positives = 21/28 (75%)
 Frame = -1

Query: 403 HLDRIVFIHRVITERFQRFVLVFLLWSE 320
           HLDR +++H+V+T R    +++ L++SE
Sbjct: 164 HLDRYLYVHKVLTCRLGSALMLSLIYSE 191


>11_06_0102 +
           20112731-20112928,20113314-20113514,20113606-20113695,
           20114269-20114457,20115375-20115387,20115824-20115990,
           20117334-20117522,20118940-20119053,20120912-20121010,
           20122368-20122490,20122579-20122701,20123179-20123277,
           20124786-20124842,20125136-20125182,20125296-20125439,
           20125540-20125717,20126318-20126398,20126480-20126563,
           20126624-20126629
          Length = 733

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 13/44 (29%), Positives = 26/44 (59%)
 Frame = -1

Query: 310 RVHNGHRGFLYQKYNF*NFCLSACNLKWAISGTTGQLLRVTLVL 179
           R H G + + ++  +  ++ LS+ +  WA+S TT + L+  L+L
Sbjct: 464 RNHPGDQSYWHRHRSKGSWTLSSADNGWAVSDTTAEALKAVLLL 507


>02_01_0319 -
           2148788-2148892,2149474-2149557,2149643-2149723,
           2150303-2150480,2150811-2150954,2151048-2151094,
           2151353-2151409,2151566-2151664,2151867-2151989,
           2152083-2152205,2152594-2152707,2152972-2153160,
           2153412-2153578,2153904-2153988,2155431-2155628,
           2155978-2156175
          Length = 663

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 13/44 (29%), Positives = 26/44 (59%)
 Frame = -1

Query: 310 RVHNGHRGFLYQKYNF*NFCLSACNLKWAISGTTGQLLRVTLVL 179
           R H G + + ++  +  ++ LS+ +  WA+S TT + L+  L+L
Sbjct: 361 RNHPGDQSYWHRHRSKGSWTLSSADNGWAVSDTTAEALKAVLLL 404


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,221,120
Number of Sequences: 37544
Number of extensions: 195425
Number of successful extensions: 370
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 362
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 370
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 742607976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)