Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_K08
         (415 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U28943-7|AAK68294.1|  315|Caenorhabditis elegans Serpentine rece...    28   2.3  
U58752-2|AAB00665.1|  571|Caenorhabditis elegans Hypothetical pr...    27   4.1  
AF106579-9|AAC78202.1|  327|Caenorhabditis elegans Serpentine re...    27   5.4  
Z50070-2|CAB54253.1| 1069|Caenorhabditis elegans Hypothetical pr...    26   9.4  
Z50070-1|CAA90399.1| 1105|Caenorhabditis elegans Hypothetical pr...    26   9.4  
AL110490-1|CAB54439.1|  674|Caenorhabditis elegans Hypothetical ...    26   9.4  

>U28943-7|AAK68294.1|  315|Caenorhabditis elegans Serpentine
           receptor, class d (delta)protein 56 protein.
          Length = 315

 Score = 28.3 bits (60), Expect = 2.3
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = -1

Query: 238 NLKWAISGTTGQLLRVTLVLLIFE 167
           N+ W++ G  G  L++TL+ LIF+
Sbjct: 13  NIYWSVYGILGLFLQLTLIYLIFQ 36


>U58752-2|AAB00665.1|  571|Caenorhabditis elegans Hypothetical
           protein B0218.2 protein.
          Length = 571

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 15/33 (45%), Positives = 18/33 (54%)
 Frame = -1

Query: 106 STLNKRQIELSLIISAKFYQNRVECINLVKEKS 8
           ST  KRQ+EL  I+  K  Q R E +   KE S
Sbjct: 22  STRQKRQVELQKIVDKKRAQ-RAESVKFAKESS 53


>AF106579-9|AAC78202.1|  327|Caenorhabditis elegans Serpentine
           receptor, class t protein34 protein.
          Length = 327

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 17/34 (50%), Positives = 21/34 (61%)
 Frame = -2

Query: 258 IFVCLLAILNGQSPEQLDSYSA*LWYF*FSKIIR 157
           I V LL +L+GQ   QL S +  L YF F+K IR
Sbjct: 269 ITVPLLIVLSGQFCWQLGSAAPLLIYFIFNKTIR 302


>Z50070-2|CAB54253.1| 1069|Caenorhabditis elegans Hypothetical
           protein F43G6.1b protein.
          Length = 1069

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 13/39 (33%), Positives = 24/39 (61%)
 Frame = -1

Query: 121 VQLSVSTLNKRQIELSLIISAKFYQNRVECINLVKEKSS 5
           V +S+++  +   E+S++ S  FY+NR+ C N    +SS
Sbjct: 848 VVVSLTSQYRMNREISVLSSKLFYENRLICGNESVSRSS 886


>Z50070-1|CAA90399.1| 1105|Caenorhabditis elegans Hypothetical protein
            F43G6.1a protein.
          Length = 1105

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 13/39 (33%), Positives = 24/39 (61%)
 Frame = -1

Query: 121  VQLSVSTLNKRQIELSLIISAKFYQNRVECINLVKEKSS 5
            V +S+++  +   E+S++ S  FY+NR+ C N    +SS
Sbjct: 884  VVVSLTSQYRMNREISVLSSKLFYENRLICGNESVSRSS 922


>AL110490-1|CAB54439.1|  674|Caenorhabditis elegans Hypothetical
           protein Y48B6A.1 protein.
          Length = 674

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 18/64 (28%), Positives = 31/64 (48%)
 Frame = -1

Query: 376 RVITERFQRFVLVFLLWSE*KRRVHNGHRGFLYQKYNF*NFCLSACNLKWAISGTTGQLL 197
           + ITERF+R + ++L   + K R+H      L    N  +       L + + G TGQ+ 
Sbjct: 289 KFITERFERCLDLYLAPRQRKMRIHADPTDLLPDLPNPNDLRPFPTTLAFYMRGHTGQVR 348

Query: 196 RVTL 185
            +T+
Sbjct: 349 AITV 352


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,371,265
Number of Sequences: 27780
Number of extensions: 190016
Number of successful extensions: 425
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 424
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 425
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 673122114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)