Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_K07
         (369 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.             235   1e-64
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    25   0.21 
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    25   0.28 
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   3.5  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   3.5  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    21   6.1  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   6.1  

>AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.
          Length = 133

 Score =  235 bits (575), Expect = 1e-64
 Identities = 111/113 (98%), Positives = 112/113 (99%)
 Frame = +3

Query: 3   QVITIGNERFRCPEALFQPSFLGMEANGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTM 182
           QVITIGNERFRCPEALFQPSFLGMEA GIHETTYNSIMKCDVDIRKDLYANTVLSGGTTM
Sbjct: 21  QVITIGNERFRCPEALFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTM 80

Query: 183 YPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWIS 341
           YPGIADRMQKEITALAPSTMKIKIIAPPE+KYSVWIGGSILASLSTFQQMWIS
Sbjct: 81  YPGIADRMQKEITALAPSTMKIKIIAPPEKKYSVWIGGSILASLSTFQQMWIS 133


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 25.4 bits (53), Expect = 0.21
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +1

Query: 211 RKSQPSLHPR*RLKSSRHQRGNTLYGSVDQSSPP 312
           ++SQP +HPR + ++ +HQ   T   S  Q + P
Sbjct: 215 QQSQPGMHPRQQQQAQQHQGVVTSPLSQQQQAAP 248


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 25.0 bits (52), Expect = 0.28
 Identities = 21/62 (33%), Positives = 30/62 (48%)
 Frame = +3

Query: 105 NSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSV 284
           N  +K D DI++  Y + V      MYP  +  M+K I+    +  KI I  P E K  +
Sbjct: 342 NKELKYD-DIKEMEYLDKVFKETLRMYPPASILMRKAISDYTFNDTKITI--PKEMK--I 396

Query: 285 WI 290
           WI
Sbjct: 397 WI 398


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.4 bits (43), Expect = 3.5
 Identities = 5/10 (50%), Positives = 6/10 (60%)
 Frame = +2

Query: 167 WWYHHVPWYC 196
           WW H + W C
Sbjct: 526 WWSHVLGWLC 535


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.4 bits (43), Expect = 3.5
 Identities = 5/10 (50%), Positives = 6/10 (60%)
 Frame = +2

Query: 167 WWYHHVPWYC 196
           WW H + W C
Sbjct: 579 WWSHVLGWLC 588


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 20.6 bits (41), Expect = 6.1
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -2

Query: 143 VFTDVNVTLHDGVVC 99
           +F  +NV LH  V+C
Sbjct: 11  LFVIINVLLHGQVIC 25


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 20.6 bits (41), Expect = 6.1
 Identities = 10/37 (27%), Positives = 19/37 (51%)
 Frame = +3

Query: 54  QPSFLGMEANGIHETTYNSIMKCDVDIRKDLYANTVL 164
           + +FLG+    +   +YN +   D  + KDL+   +L
Sbjct: 328 ETTFLGLIRLIVLNLSYNMLTHIDARMFKDLFFLQIL 364


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.314    0.122    0.365 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 122,074
Number of Sequences: 438
Number of extensions: 2611
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8804355
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.7 bits)