Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0003_K06
(466 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC543.07 |pek1|skh1, mkk1|MAP kinase kinase Pek1 |Schizosaccha... 36 0.004
SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces po... 29 0.26
SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces po... 26 2.5
SPCC63.08c |ppk36|atg1|serine/threonine protein kinase Ppk36|Sch... 26 3.3
SPCC330.07c |||membrane transporter|Schizosaccharomyces pombe|ch... 25 4.3
SPAC1A6.11 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 25 5.7
SPBC428.01c |nup107|SPBC582.11c|nucleoporin Nup107|Schizosacchar... 25 5.7
SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces p... 24 9.9
SPBC11C11.01 ||SPBC17D1.08|RNA-binding protein|Schizosaccharomyc... 24 9.9
SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces... 24 9.9
>SPBC543.07 |pek1|skh1, mkk1|MAP kinase kinase Pek1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 363
Score = 35.5 bits (78), Expect = 0.004
Identities = 23/73 (31%), Positives = 32/73 (43%)
Frame = -1
Query: 367 FPLNPQATPYDVTPMTSKRQPLLRNSGPPLSPSQVSFEWSWSPKHICVVPLYPFKRCR*G 188
FP P+ +P PM + + N PPL P + +WS S +H V L K R G
Sbjct: 277 FPFPPEGSP---PPMPIELLSYIINMPPPLLPQEPGIKWSKSFQHFLCVCLDKDKTRRPG 333
Query: 187 WYILLHSSWLNLF 149
+L W+ F
Sbjct: 334 PQKMLTHPWVKAF 346
>SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1313
Score = 29.5 bits (63), Expect = 0.26
Identities = 18/47 (38%), Positives = 28/47 (59%), Gaps = 4/47 (8%)
Frame = -3
Query: 203 EMSVRLVYLAALLMAEPVQMHSIM*FWWHF-VSYR---LVIVYKSSL 75
E + + LAAL A P+ H ++ F HF V+Y+ +V+ Y+SSL
Sbjct: 704 ETYIAIAALAALSDASPLVRHELVIFLSHFVVNYKKQLMVVAYESSL 750
>SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 793
Score = 26.2 bits (55), Expect = 2.5
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = +3
Query: 294 FLSNGCRFDVIGVTSYGVACGFKGNAGVYTRVEHYVPW 407
+L++ F+ I VT G GF GNA Y+ H W
Sbjct: 581 YLASHPDFEFIVVTLDGRGTGFNGNAFRYSVSRHLGEW 618
>SPCC63.08c |ppk36|atg1|serine/threonine protein kinase
Ppk36|Schizosaccharomyces pombe|chr 3|||Manual
Length = 830
Score = 25.8 bits (54), Expect = 3.3
Identities = 17/61 (27%), Positives = 27/61 (44%)
Frame = -1
Query: 391 STLVYTPAFPLNPQATPYDVTPMTSKRQPLLRNSGPPLSPSQVSFEWSWSPKHICVVPLY 212
+TL YTP FP P + +QP+ P SP++++ + S VV +
Sbjct: 388 NTLPYTPVFPPESAPAASIFPPRLTSKQPI-----PMASPAKLTSDTSNKSSAYVVVDHH 442
Query: 211 P 209
P
Sbjct: 443 P 443
>SPCC330.07c |||membrane transporter|Schizosaccharomyces pombe|chr
3|||Manual
Length = 500
Score = 25.4 bits (53), Expect = 4.3
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = -2
Query: 198 VGEVGISCCTPHG*TCSDALYHVILVAFCVI*IG 97
V +VG+S G C A+Y++ V F + +G
Sbjct: 446 VVQVGVSLSNTFGSICGGAIYNITTVGFISLCLG 479
>SPAC1A6.11 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 106
Score = 25.0 bits (52), Expect = 5.7
Identities = 11/32 (34%), Positives = 18/32 (56%), Gaps = 3/32 (9%)
Frame = -1
Query: 157 NLFRCTLSCNFGGILCH---IDWLLYTSQVYY 71
++F+C SCN+ + H + LY S+ YY
Sbjct: 48 HIFKCLSSCNYALSILHNICLASFLYLSKCYY 79
>SPBC428.01c |nup107|SPBC582.11c|nucleoporin
Nup107|Schizosaccharomyces pombe|chr 2|||Manual
Length = 794
Score = 25.0 bits (52), Expect = 5.7
Identities = 9/32 (28%), Positives = 19/32 (59%)
Frame = -1
Query: 175 LHSSWLNLFRCTLSCNFGGILCHIDWLLYTSQ 80
+H+ +L + ++ ++C ++WLL TSQ
Sbjct: 546 VHTVYLKSIEEPVEPSYKKLICTLEWLLITSQ 577
>SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1040
Score = 24.2 bits (50), Expect = 9.9
Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Frame = +1
Query: 61 VIFHNKLDLYTITNLYD--TKCHQNYMIECI 147
+IF NKL L T+ N Y+ +NY +E +
Sbjct: 687 IIFQNKLLLRTLENRYEDYESYKENYHLELV 717
>SPBC11C11.01 ||SPBC17D1.08|RNA-binding protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 493
Score = 24.2 bits (50), Expect = 9.9
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = +3
Query: 126 KLHDRVHLNRFSHEECSKIYQPHRHLLNGYNGTT 227
K++D ++N ++ S IY + L NG +GT+
Sbjct: 293 KVYDDDYINERGEKKLSLIYLMNDILFNGISGTS 326
>SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 565
Score = 24.2 bits (50), Expect = 9.9
Identities = 18/61 (29%), Positives = 24/61 (39%), Gaps = 2/61 (3%)
Frame = -1
Query: 394 CSTLVYTPAFPLNPQATPYDVTPM-TSKRQPLLRNSGPPLSPSQVSF-EWSWSPKHICVV 221
CST +P F + DVTP+ T P LR P S S P + ++
Sbjct: 395 CSTAPSSPTFSTRSFSPTPDVTPLVTPAHSPRLRPMDDPSCVQLPSIRSLSLRPSQVPLI 454
Query: 220 P 218
P
Sbjct: 455 P 455
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,183,218
Number of Sequences: 5004
Number of extensions: 49330
Number of successful extensions: 126
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 176367270
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -