Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_K06
         (466 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U70848-2|AAB09110.4|  313|Caenorhabditis elegans Trypsin-like pr...    56   2e-08
U29380-14|AAA68746.2|  293|Caenorhabditis elegans Trypsin-like p...    53   1e-07
U58751-11|AAB00662.1|  265|Caenorhabditis elegans Trypsin-like p...    51   5e-07
AF003384-12|AAB54236.2|  331|Caenorhabditis elegans Trypsin-like...    31   0.31 
Z92832-5|CAB07374.2|  292|Caenorhabditis elegans Hypothetical pr...    29   2.2  
Z78416-4|CAB01678.2|  611|Caenorhabditis elegans Hypothetical pr...    28   2.9  
Z77661-11|CAB01190.2| 1099|Caenorhabditis elegans Hypothetical p...    28   2.9  
U80440-2|AAK21469.1|  162|Caenorhabditis elegans Hypothetical pr...    28   2.9  
U88314-6|AAF99886.1|  240|Caenorhabditis elegans Hypothetical pr...    27   5.0  
Z79602-1|CAB01888.3|  508|Caenorhabditis elegans Hypothetical pr...    27   6.6  
U64842-2|AAB37084.1|  462|Caenorhabditis elegans Hypothetical pr...    27   6.6  
U12787-1|AAA92672.1|  458|Caenorhabditis elegans HMG CoA synthas...    27   6.6  
U64852-5|AAB04968.1|  746|Caenorhabditis elegans Hypothetical pr...    27   8.8  
AC024826-3|AAP13746.1|  343|Caenorhabditis elegans Hypothetical ...    27   8.8  
AC024826-2|AAF60798.1|  413|Caenorhabditis elegans Hypothetical ...    27   8.8  

>U70848-2|AAB09110.4|  313|Caenorhabditis elegans Trypsin-like
           protease protein 3 protein.
          Length = 313

 Score = 55.6 bits (128), Expect = 2e-08
 Identities = 40/96 (41%), Positives = 53/96 (55%), Gaps = 8/96 (8%)
 Frame = +3

Query: 159 SHEECSKIYQPHRHLLNGYNGTTQMCFGDHDHSKDTCEGDSGGPLFL--SNGCRFDVIGV 332
           S ++C K ++    LL+      Q+C G + H   T  GDSGGPL +  SNG  +  IG+
Sbjct: 192 SDDDCVKTWR-FLSLLSVKITGYQICAGAYLHG--TAPGDSGGPLLIHKSNG-EYVQIGI 247

Query: 333 TSYGVACGFKGNA------GVYTRVEHYVPWIESVV 422
           TSYG A G  G        GVYTR+  YVPWI+ V+
Sbjct: 248 TSYG-ADGLDGVIDQGKFPGVYTRISKYVPWIQGVI 282


>U29380-14|AAA68746.2|  293|Caenorhabditis elegans Trypsin-like
           protease protein 1 protein.
          Length = 293

 Score = 52.8 bits (121), Expect = 1e-07
 Identities = 23/62 (37%), Positives = 33/62 (53%)
 Frame = +3

Query: 225 TQMCFGDHDHSKDTCEGDSGGPLFLSNGCRFDVIGVTSYGVACGFKGNAGVYTRVEHYVP 404
           + +C G      D+C+GDSGGPL  +    +++ GV S+G+ C   G  GVY  V     
Sbjct: 223 SMLCAGYSYGKIDSCQGDSGGPLMCARDGHWELTGVVSWGIGCARPGMPGVYGNVHSAST 282

Query: 405 WI 410
           WI
Sbjct: 283 WI 284


>U58751-11|AAB00662.1|  265|Caenorhabditis elegans Trypsin-like
           protease protein 2 protein.
          Length = 265

 Score = 50.8 bits (116), Expect = 5e-07
 Identities = 24/64 (37%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
 Frame = +3

Query: 234 CFGDHDHSKDTCEGDSGGPLFLSN-GCRFDVIGVTSYGVACGFKGNAGVYTRVEHYVPWI 410
           C G  +   D+C+GDSGGP         F + GV S+G  C  K   G+YT V  Y+ WI
Sbjct: 197 CAGYLEGGIDSCQGDSGGPFACRREDGAFVLAGVISWGDGCAQKKQPGIYTMVAPYLSWI 256

Query: 411 ESVV 422
            +++
Sbjct: 257 SAII 260


>AF003384-12|AAB54236.2|  331|Caenorhabditis elegans Trypsin-like
           protease protein 5 protein.
          Length = 331

 Score = 31.5 bits (68), Expect = 0.31
 Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
 Frame = +3

Query: 249 DHSKDTCEGDSGGPLFL--SNGCRFDVIGVTSYGVAC 353
           +  K+ C GDSGG L    S+  R  +I + SYG  C
Sbjct: 264 EEDKNVCSGDSGGGLTFHQSDSAREFIIAIVSYGSDC 300


>Z92832-5|CAB07374.2|  292|Caenorhabditis elegans Hypothetical
           protein F31D4.6 protein.
          Length = 292

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
 Frame = +3

Query: 264 TCEGDSGGPLFL--SNGCRFDVIGVTSYGVACGFKGNAGVYTRVEHYV 401
           TC GDSGG L     N  R  +I +TS+G           +TRV+ Y+
Sbjct: 234 TCHGDSGGGLEYRDDNYGRAFLIAITSFGTRGCPSNMLARFTRVDMYL 281


>Z78416-4|CAB01678.2|  611|Caenorhabditis elegans Hypothetical
           protein C23H4.4 protein.
          Length = 611

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 13/41 (31%), Positives = 24/41 (58%)
 Frame = -3

Query: 197 SVRLVYLAALLMAEPVQMHSIM*FWWHFVSYRLVIVYKSSL 75
           S+ ++Y  A+   E +++ S++  WW +VS  L+ V  S L
Sbjct: 554 SLPIIYAPAVSDPENLELISVLNQWWFYVSILLLFVIVSVL 594


>Z77661-11|CAB01190.2| 1099|Caenorhabditis elegans Hypothetical
           protein F40G12.3 protein.
          Length = 1099

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -1

Query: 337 DVTPMTSKRQPLLRNSGPPLSPS 269
           DV+P+T K++P   N  P  +PS
Sbjct: 433 DVSPITDKKEPSRNNDNPKFTPS 455


>U80440-2|AAK21469.1|  162|Caenorhabditis elegans Hypothetical
           protein T21E12.3 protein.
          Length = 162

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 18/46 (39%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
 Frame = +3

Query: 222 TTQMCFGDHDHSKD--TCEGDSGGPLFLSNGCRFDVIGVTSYGVAC 353
           TT   F     SK+   C GDSGG +      R  V+GV   GV C
Sbjct: 56  TTGKAFCTKSISKNQLACTGDSGGGVVQLINDRVTVVGVIYEGVTC 101


>U88314-6|AAF99886.1|  240|Caenorhabditis elegans Hypothetical
           protein C46H11.7 protein.
          Length = 240

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = -2

Query: 186 GISCCTPHG*TCSDALYHVILVAFCVI*IGYC 91
           G+S CT     C+D++Y+ ++   C    G C
Sbjct: 148 GVSDCTARASLCNDSVYYAVMTQQCPRTCGRC 179


>Z79602-1|CAB01888.3|  508|Caenorhabditis elegans Hypothetical
           protein K09E9.1 protein.
          Length = 508

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 20/63 (31%), Positives = 29/63 (46%)
 Frame = -3

Query: 197 SVRLVYLAALLMAEPVQMHSIM*FWWHFVSYRLVIVYKSSLLWKITRSIYSEVPHKASCK 18
           SV L  LAAL++  P+Q + I    W  +   L+I       WKI   +YS      S +
Sbjct: 386 SVGLCCLAALMIL-PIQYYDIQCMRWVIIMLSLMIAAGIDPTWKINH-LYSAELFPTSVR 443

Query: 17  VLA 9
            +A
Sbjct: 444 SMA 446


>U64842-2|AAB37084.1|  462|Caenorhabditis elegans Hypothetical
           protein F25B4.6 protein.
          Length = 462

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -1

Query: 352 QATPYDVTPMTSKRQPLLRNSGPPLSPSQVS 260
           Q TP + T    KR+  LR+   P SPS+ S
Sbjct: 396 QFTPEEFTETLQKREVFLRSKEIPKSPSETS 426


>U12787-1|AAA92672.1|  458|Caenorhabditis elegans HMG CoA synthase
           protein.
          Length = 458

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -1

Query: 352 QATPYDVTPMTSKRQPLLRNSGPPLSPSQVS 260
           Q TP + T    KR+  LR+   P SPS+ S
Sbjct: 392 QFTPEEFTETLQKREVFLRSKEIPKSPSETS 422


>U64852-5|AAB04968.1|  746|Caenorhabditis elegans Hypothetical
           protein W01A11.5 protein.
          Length = 746

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 9/31 (29%), Positives = 14/31 (45%)
 Frame = +3

Query: 306 GCRFDVIGVTSYGVACGFKGNAGVYTRVEHY 398
           G  F  +    YG+   F GN G++  +  Y
Sbjct: 689 GACFGAVAADGYGICYRFGGNHGIFANITSY 719


>AC024826-3|AAP13746.1|  343|Caenorhabditis elegans Hypothetical
           protein Y55F3AM.6b protein.
          Length = 343

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +3

Query: 303 NGCRFDVIGVTSYGVACGF 359
           N C F+++G  SYG AC F
Sbjct: 34  NICHFNLVGKCSYGRACRF 52


>AC024826-2|AAF60798.1|  413|Caenorhabditis elegans Hypothetical
           protein Y55F3AM.6a protein.
          Length = 413

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +3

Query: 303 NGCRFDVIGVTSYGVACGF 359
           N C F+++G  SYG AC F
Sbjct: 34  NICHFNLVGKCSYGRACRF 52


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,233,016
Number of Sequences: 27780
Number of extensions: 290709
Number of successful extensions: 716
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 677
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 714
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 829055604
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)