Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_K04
         (508 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC622.11 |||LMBR1-like membrane protein|Schizosaccharomyces po...    29   0.40 
SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|...    27   2.1  
SPCC18.13 |||tRNA |Schizosaccharomyces pombe|chr 3|||Manual            26   2.8  
SPAC664.14 |amt2||ammonium transporter Amt2|Schizosaccharomyces ...    26   2.8  
SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|c...    26   3.7  
SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni...    25   8.6  
SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid alpha...    25   8.6  

>SPCC622.11 |||LMBR1-like membrane protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 562

 Score = 29.1 bits (62), Expect = 0.40
 Identities = 11/32 (34%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
 Frame = +1

Query: 94  IFFATNINQIHIPACY-FVRCIGFCSQFHEYF 186
           I+FA+ + ++ +P CY FV    + +QFH+++
Sbjct: 437 IYFASQLCRLTLPLCYNFVSLQPYPTQFHQFY 468


>SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 664

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = -2

Query: 138 AGRNMNLVNVSSKKNFENNLDS 73
           +GRN   +N SSKK  EN+L S
Sbjct: 576 SGRNRTFLNRSSKKRAENSLKS 597


>SPCC18.13 |||tRNA |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 421

 Score = 26.2 bits (55), Expect = 2.8
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = -3

Query: 347 KVEITYTRKQPNFCRSVCFSGKS 279
           K+E+ Y +  P  C  +CF+G +
Sbjct: 96  KIELLYQKNIPKRCADLCFAGSN 118


>SPAC664.14 |amt2||ammonium transporter Amt2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 512

 Score = 26.2 bits (55), Expect = 2.8
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = +1

Query: 133 ACYFVRCIGFCSQFHEYFFWAEP*LFSQNKGNLNYV 240
           A   +  +G C  F +++FW     FSQ  G   Y+
Sbjct: 79  ALIMLSMLGLCVSFFQWYFWGYSLAFSQT-GTSGYI 113


>SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 871

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -2

Query: 189 KKIFMKLRTKSDAANKIAGRNMNLVNVSSKKN 94
           KK+  K++ +SD  NK      +L+N S KK+
Sbjct: 219 KKLEKKVKKRSDLGNKYESTLNSLINKSVKKH 250


>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
           Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2199

 Score = 24.6 bits (51), Expect = 8.6
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = -2

Query: 186 KIFMKLRTKSDAANKIAGRNMNLVNVSSKKNFENNLDSVLK 64
           K++ +L  + D A   +    N VNV   +N+E   DS+LK
Sbjct: 565 KVYEELILQLDKALDFSLTVENNVNVDEIENYEEVRDSILK 605


>SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid
           alpha-glucosyltransferase Alg10|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 445

 Score = 24.6 bits (51), Expect = 8.6
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +3

Query: 117 PNSYSCLLFCSLHRILFAIS*IFFLGRTLI 206
           P+   CL+  +LH ++ +++   FL RT I
Sbjct: 403 PSGRECLMEYALHMVINSVTLYIFLFRTFI 432


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,031,204
Number of Sequences: 5004
Number of extensions: 40767
Number of successful extensions: 94
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 202220600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)