Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_K04
         (508 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0420 + 3175544-3176696,3177035-3178581,3179623-3179688,317...    28   5.0  
05_05_0317 + 24039343-24042717                                         27   6.5  
01_07_0205 - 41978437-41980599,41980805-41981215                       27   6.5  
11_03_0073 - 9621199-9621312,9621401-9621476,9621553-9621619,962...    27   8.7  
03_06_0380 + 33518309-33518464,33518978-33519064,33519155-335194...    27   8.7  

>01_01_0420 +
           3175544-3176696,3177035-3178581,3179623-3179688,
           3179892-3179999
          Length = 957

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 5/71 (7%)
 Frame = +2

Query: 146 FAASDFVRNFMNIFFGQNPN--YFRKIKET*IMYHNIHVIIGPTVPEISR---KNRQTYK 310
           F A+  +    N F G  P   +F+K+K   I Y N  +++   VP + R       TYK
Sbjct: 663 FPAARIIDLASNNFSGPLPQDQWFKKLKSMMIGYSNTSLVMDHEVPRVGRYKFSTTITYK 722

Query: 311 NLAVCVYR*FR 343
             AV + +  R
Sbjct: 723 GSAVTLTKILR 733


>05_05_0317 + 24039343-24042717
          Length = 1124

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = +1

Query: 103 ATNINQIHIPACYFVRCIGFCSQFH-EYFFWAE 198
           A  ++  H+PA    RC  FCS FH +Y F  E
Sbjct: 415 ALRLSYNHLPAI-LKRCFAFCSVFHKDYVFEKE 446


>01_07_0205 - 41978437-41980599,41980805-41981215
          Length = 857

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +1

Query: 94  IFFATNINQIHIPACYFVRCIGFCSQF 174
           +F A  ++  H+PAC    C  FCS F
Sbjct: 355 VFLAIELSYKHLPAC-IKGCFAFCSLF 380


>11_03_0073 -
           9621199-9621312,9621401-9621476,9621553-9621619,
           9621655-9621751,9621898-9621996,9622348-9622358,
           9622716-9622784,9622871-9623195,9623287-9623457,
           9623538-9623713,9624173-9624414,9624481-9624542,
           9625305-9625340,9626103-9626262,9626372-9626606,
           9626694-9626949,9627062-9627176,9628388-9628450,
           9628592-9629325
          Length = 1035

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 13/54 (24%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
 Frame = +1

Query: 34  IYSLRNIVFDF*YGIQIIFKIFFATNINQI-HIPACYFVRCIGFCSQFHEYFFW 192
           +Y+   + F    G+ ++ +  F   +  +  +     VR +G+CSQ  E F W
Sbjct: 306 VYNEEELAFKKIDGLAVLNEDQFKNELKHLMSVQHRNIVRFVGYCSQIKEKFIW 359


>03_06_0380 +
           33518309-33518464,33518978-33519064,33519155-33519400,
           33519559-33519723,33519920-33519973,33520079-33520225,
           33520916-33521293
          Length = 410

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 11/31 (35%), Positives = 22/31 (70%)
 Frame = -1

Query: 331 IHANSQIFVGLSVFPGNLRNGRTDYDVNIVV 239
           +  NS+I +G S+FP +  +G + YD++I++
Sbjct: 254 VQINSEIAMGASIFPISSYSG-SQYDISIMI 283


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,555,359
Number of Sequences: 37544
Number of extensions: 211138
Number of successful extensions: 379
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 374
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 379
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1083123860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)