Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_K04
         (508 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL032658-4|CAA21746.1|  283|Caenorhabditis elegans Hypothetical ...    30   0.84 
Z46828-7|CAA86860.1|  311|Caenorhabditis elegans Hypothetical pr...    28   4.5  
AF125446-2|AAD12805.1|  379|Caenorhabditis elegans Hypothetical ...    27   5.9  

>AL032658-4|CAA21746.1|  283|Caenorhabditis elegans Hypothetical
           protein Y76A2B.5 protein.
          Length = 283

 Score = 30.3 bits (65), Expect = 0.84
 Identities = 13/68 (19%), Positives = 28/68 (41%)
 Frame = +1

Query: 127 IPACYFVRCIGFCSQFHEYFFWAEP*LFSQNKGNLNYVPQYSRHNRSDRSGDFPEKQTDL 306
           + A + +     CS  H + +WA+   F        Y+  Y+ H   + +  + +    +
Sbjct: 180 LTASFIMSANAICSTLHRFGYWAD---FIDPSSGRPYMGDYTNHTLFETNDAYKQMGFKI 236

Query: 307 QKFGCLRV 330
           +  GC +V
Sbjct: 237 EDLGCCKV 244


>Z46828-7|CAA86860.1|  311|Caenorhabditis elegans Hypothetical
           protein R03D7.7 protein.
          Length = 311

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +1

Query: 208 FSQNKGNLNYVPQYSRHNRSDRSGDFPEKQ 297
           F +N G   Y PQ + HN S R+G+   ++
Sbjct: 192 FGENSGFHGYNPQMNVHNNSTRNGNVENRE 221


>AF125446-2|AAD12805.1|  379|Caenorhabditis elegans Hypothetical
           protein R05C11.2 protein.
          Length = 379

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
 Frame = +3

Query: 270 PFRRFPGKTDRPTKIWLFACIGNF-DLNNRYFNSI 371
           PFR     T+    IW F C+ +  DL  RY+ ++
Sbjct: 320 PFRIVTDSTNNQPSIWFFNCMNDTDDLQIRYYQNL 354


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,104,187
Number of Sequences: 27780
Number of extensions: 227780
Number of successful extensions: 515
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 510
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 515
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 977860456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)