Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0003_K02
(538 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC18G6.14c |rps7||40S ribosomal protein S7|Schizosaccharomyces... 191 5e-50
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual 28 0.77
SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog 1|Schizosa... 27 1.3
SPCC576.09 |rps20||40S ribosomal protein S20|Schizosaccharomyces... 27 1.8
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 27 1.8
SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein Vps1|Schizo... 27 2.3
SPBC17A3.03c |||phosphoprotein phosphatase |Schizosaccharomyces ... 26 3.1
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ... 25 5.4
SPAC19A8.10 |rfp1|mug140|ubiquitin-protein ligase E3 Rfp1|Schizo... 25 7.2
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo... 25 7.2
SPCC74.04 |||amino acid permease, unknown 15|Schizosaccharomyces... 25 9.5
SPAC513.02 |||phosphoglycerate mutase family|Schizosaccharomyces... 25 9.5
SPCC965.05c |thp1||uracil DNA N-glycosylase Thp1 |Schizosaccharo... 25 9.5
>SPAC18G6.14c |rps7||40S ribosomal protein S7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 195
Score = 191 bits (466), Expect = 5e-50
Identities = 94/180 (52%), Positives = 130/180 (72%), Gaps = 2/180 (1%)
Frame = +3
Query: 3 KILKAGAIEPDTFETSISQALVELETNS-DLKAQLRELYITKAKEIELHN-KKSIIIYVP 176
KI+K + +P + ++Q L +LE++S D+ +LR L IT A+E+E+ KK+I+++VP
Sbjct: 6 KIVKRSSSQPTETDLLVAQCLYDLESSSKDMAKELRPLQITSAREVEVGGGKKAIVVFVP 65
Query: 177 MPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSV 356
P LKAF K Q RL RELEKKF+ +HV+F+ R+ILPKP K+RV QKRPRSRTLT+V
Sbjct: 66 QPLLKAFHKCQARLTRELEKKFADRHVIFIAQRRILPKPGRKSRVT--QKRPRSRTLTAV 123
Query: 357 YDAILEDLVFPAEIVGKRIRVKLDGSQLIKVHLDXNQQTTIEHKVDTFQSVYKKLTGREV 536
++AILED+VFP EI+GKR R DG + IKV LD T+++K+ +F SVY KLTG+ V
Sbjct: 124 HNAILEDIVFPTEIIGKRTRQATDGRKTIKVFLDNRDANTVDYKLGSFSSVYHKLTGKNV 183
>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1828
Score = 28.3 bits (60), Expect = 0.77
Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 1/81 (1%)
Frame = +3
Query: 252 HVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILEDLVFPAEIVGKRIRVKLDG 431
H V V D+ + P N+Q R +L+ + D + + V E V R K G
Sbjct: 1594 HTVLVLDKSVHQFPWESLPCLNRQSVSRVPSLSILRDILSQSFVVNGEYVEVR---KEAG 1650
Query: 432 SQLIKVHLD-XNQQTTIEHKV 491
S ++ LD + Q EHK+
Sbjct: 1651 SYILNPSLDLKHTQEMFEHKL 1671
>SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 941
Score = 27.5 bits (58), Expect = 1.3
Identities = 16/54 (29%), Positives = 30/54 (55%)
Frame = +3
Query: 339 RTLTSVYDAILEDLVFPAEIVGKRIRVKLDGSQLIKVHLDXNQQTTIEHKVDTF 500
++L + YD + EDL ++ +GK+ ++ ++L VHL + TIE + F
Sbjct: 565 QSLFASYDKLQEDL---SKRLGKKATLRKSPAKLYYVHLKLSGNETIERFIKKF 615
>SPCC576.09 |rps20||40S ribosomal protein S20|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 118
Score = 27.1 bits (57), Expect = 1.8
Identities = 10/37 (27%), Positives = 23/37 (62%)
Frame = +3
Query: 33 DTFETSISQALVELETNSDLKAQLRELYITKAKEIEL 143
+T+E I + L++L + S++ Q+ ++I E+E+
Sbjct: 78 ETYEMRIHKRLIDLHSPSEIVKQITSIHIEPGVEVEV 114
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 27.1 bits (57), Expect = 1.8
Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 3/39 (7%)
Frame = +3
Query: 9 LKAGA-IEPDTFETSISQALVE--LETNSDLKAQLRELY 116
+KA A I+PD FE +I Q L + N LK ++ +LY
Sbjct: 2123 VKANAFIDPDNFEVNIEQTLSKNFFGNNQYLKLKIMQLY 2161
>SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein
Vps1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 678
Score = 26.6 bits (56), Expect = 2.3
Identities = 13/31 (41%), Positives = 22/31 (70%)
Frame = +3
Query: 165 IYVPMPKLKAFQKIQIRLVRELEKKFSGKHV 257
+++P K F+KI+ +VRE E+K +GK+V
Sbjct: 101 LHLPGQKFFEFEKIREEIVRETEEK-TGKNV 130
>SPBC17A3.03c |||phosphoprotein phosphatase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 263
Score = 26.2 bits (55), Expect = 3.1
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
Frame = -3
Query: 449 HFDEL*AIELHSDA--FANN--LGREYQIFQYGVIYRSQCPGTGPFLFV 315
H D + ++ +DA F+N+ + + + G+IYRS CP F F+
Sbjct: 36 HKDGIKVVDTSNDASTFSNSPLVPDNFGVVYPGIIYRSACPRASNFNFL 84
>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 3655
Score = 25.4 bits (53), Expect = 5.4
Identities = 12/46 (26%), Positives = 24/46 (52%)
Frame = +3
Query: 6 ILKAGAIEPDTFETSISQALVELETNSDLKAQLRELYITKAKEIEL 143
I + G + +TF+ +SQA ++ + L +RE ++ E +L
Sbjct: 3170 ISRLGVVSKNTFQLPMSQANIQRFAENVLPVSVREAFLRDFVETKL 3215
>SPAC19A8.10 |rfp1|mug140|ubiquitin-protein ligase E3
Rfp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 254
Score = 25.0 bits (52), Expect = 7.2
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = +3
Query: 285 PKPSHKTRVANKQKRPRSRTLTSVYDAILEDLVFPAEIVGKR 410
P S + R N+++ RSR S + + LED+++ V R
Sbjct: 49 PVLSPRRRRMNRRRNERSRNFPSNHLSYLEDMIYLGPQVSTR 90
>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1811
Score = 25.0 bits (52), Expect = 7.2
Identities = 14/38 (36%), Positives = 17/38 (44%)
Frame = -1
Query: 478 IVVCWFXSRCTLMSCEPSSFTLMRLPTISAGNTRSSNM 365
I V W C+L P F+L +L IS N R M
Sbjct: 1173 IEVSWEEIECSLELSNPRLFSLQKLVEISYYNMRRIRM 1210
>SPCC74.04 |||amino acid permease, unknown 15|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 557
Score = 24.6 bits (51), Expect = 9.5
Identities = 10/31 (32%), Positives = 14/31 (45%)
Frame = -2
Query: 369 IWRHIQKSVSWNGAFSVCWLHVSCGWAWAGS 277
+W HI+ W F++ L CG W S
Sbjct: 247 VWSHIENYTDWPDGFAI--LMSFCGVIWTMS 275
>SPAC513.02 |||phosphoglycerate mutase family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 216
Score = 24.6 bits (51), Expect = 9.5
Identities = 18/66 (27%), Positives = 28/66 (42%)
Frame = +3
Query: 222 RELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILEDLVFPAEIV 401
++LEK+F G + + PK + K RSR L + A + + VF
Sbjct: 108 KDLEKQFPGYDYTACHEDPVFPKKEKIYKADYKTSIQRSRVLAEFF-AKVPEKVFAVVTH 166
Query: 402 GKRIRV 419
G IR+
Sbjct: 167 GVDIRL 172
>SPCC965.05c |thp1||uracil DNA N-glycosylase Thp1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 325
Score = 24.6 bits (51), Expect = 9.5
Identities = 12/44 (27%), Positives = 21/44 (47%)
Frame = +3
Query: 9 LKAGAIEPDTFETSISQALVELETNSDLKAQLRELYITKAKEIE 140
L A+E T E + V + S LKA +++ + K E++
Sbjct: 92 LLKSAVETITLENGLRNRRVNVTKKSTLKASVKKSTLKKKNEVD 135
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,265,196
Number of Sequences: 5004
Number of extensions: 46868
Number of successful extensions: 146
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 222442660
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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