Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_K01
         (612 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces...    31   0.099
SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces pomb...    29   0.53 
SPBC21C3.19 |||DUF1960 family protein|Schizosaccharomyces pombe|...    27   1.6  
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac...    27   2.1  
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    26   3.7  
SPAC6B12.11 |drc1|sld1|DNA replication protein Drc1|Schizosaccha...    26   3.7  
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   4.9  
SPBC1709.03 |||conserved fungal protein|Schizosaccharomyces pomb...    25   6.5  

>SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 442

 Score = 31.5 bits (68), Expect = 0.099
 Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 6/69 (8%)
 Frame = +2

Query: 164 YSKNTVQS-HRN*IAASIHFW--TVSHRAWTR-THAAIS--LQSRTVPTSSSTSYATKME 325
           Y+ N+  S H      S   W  + S +AW R T  ++S  ++S+T+P   STSY  ++E
Sbjct: 18  YNGNSFNSIHATSFGMSPQSWGNSFSGQAWLRDTIPSLSNVVESQTIPEEDSTSYLNRLE 77

Query: 326 TESLCSSLR 352
            E+ C   R
Sbjct: 78  -EAFCRDFR 85


>SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 262

 Score = 29.1 bits (62), Expect = 0.53
 Identities = 20/77 (25%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
 Frame = +2

Query: 224 TVSHRAWTRTHAAISLQSRTVPTSSSTSYATKMETES--LCSSLRAVLSACKRRLIQSRL 397
           T+S   ++ T A+ +  S   P+SSST+ ++   + S  + SS+ + +S+     + S  
Sbjct: 128 TISGGIYSSTSASSTSSSTATPSSSSTTSSSSSSSSSTPISSSITSSISSSASSSVSSSS 187

Query: 398 VSLS*KTASLTLKPLTA 448
            S S   +S   K ++A
Sbjct: 188 ASSSGSISSADAKTVSA 204


>SPBC21C3.19 |||DUF1960 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 106

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = +1

Query: 307 ICYKDGDRIALFIAESGPECLQEKADSIKTCFTKLKDSF 423
           +CY+  D   + IA +GP+ ++ + D      T++ DSF
Sbjct: 11  VCYQPEDTTFIIIASNGPDVMRWRKDK-TVPLTEIVDSF 48


>SPAC18G6.05c |||translation elongation regulator Gcn1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2670

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 19/58 (32%), Positives = 25/58 (43%)
 Frame = +2

Query: 293 SSSTSYATKMETESLCSSLRAVLSACKRRLIQSRLVSLS*KTASLTLKPLTAFLPPKS 466
           SS  SYA +    S+  S       C R L   ++ SL    + L  +   A LPPKS
Sbjct: 150 SSFLSYALRDGKPSVADSAIKSTRRCYRSLFCKKMDSLKKLVSFLLTETENAILPPKS 207


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 20/70 (28%), Positives = 35/70 (50%)
 Frame = +2

Query: 275 SRTVPTSSSTSYATKMETESLCSSLRAVLSACKRRLIQSRLVSLS*KTASLTLKPLTAFL 454
           S   PTS+S+SY   + + S+ SS  +  S+    L  S L + S  + S +    ++ L
Sbjct: 198 SSAAPTSTSSSY---LSSSSVVSSSSSPSSSSSSTLTSSSLSTSSIPSTSSSSSSTSSSL 254

Query: 455 PPKSAANTMS 484
              S+++T S
Sbjct: 255 SSSSSSSTAS 264


>SPAC6B12.11 |drc1|sld1|DNA replication protein
           Drc1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 337

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 12/45 (26%), Positives = 27/45 (60%)
 Frame = +1

Query: 163 VFKKYCAKSPQLNSCINSLLDGVSPCVDPNARGHLASVKNSTNQL 297
           V K     +PQL+  + +LL+ +SP  D +    ++ +K++T+++
Sbjct: 103 VDKSLLGPTPQLSRRVLNLLEDMSPIADSHV-DQISDIKHNTSEI 146


>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 536

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +2

Query: 275 SRTVPTSSSTSYATKMETESLCSSLRAVLS 364
           S +VP+SSS+ +++ M T  L SS   V S
Sbjct: 147 SSSVPSSSSSYHSSSMTTSGLSSSASIVSS 176


>SPBC1709.03 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 398

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = +1

Query: 430 AEAAYSLSTAEKCGKYDELTTCVVNSLEQCSNPTPGNMA 546
           ++A    S   +C KY +L +C V    QCSN    N A
Sbjct: 297 SKATNDCSGHGRCSKYGQLDSCYVC---QCSNSVVSNAA 332


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,280,751
Number of Sequences: 5004
Number of extensions: 42926
Number of successful extensions: 139
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 267622334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)