Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_J24
         (571 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC777.14 |prp4||serine/threonine protein kinase Prp4|Schizosac...    28   1.1  
SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce...    26   4.5  
SPBC36B7.04 |||tRNA dihydrouridine synthase Dus1 |Schizosaccharo...    25   7.8  

>SPCC777.14 |prp4||serine/threonine protein kinase
           Prp4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 477

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -2

Query: 474 CNSLHEMIKKIGIASHQKKRLLGNCDLRGYSD 379
           CN +H  IK   +  ++K+ +L  CDL   SD
Sbjct: 280 CNVIHSDIKPDNMLVNEKRNILKICDLGSASD 311


>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2310

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = -2

Query: 267 PFGVALNHPYCARVQNSLPYFPSEHHKSQIYFLHPRNFWN 148
           P+ +AL     A +Q     + +E  KS ++ L PRNFWN
Sbjct: 799 PYILALKESADALMQFGSYEYATELLKSCLFLL-PRNFWN 837


>SPBC36B7.04 |||tRNA dihydrouridine synthase Dus1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 399

 Score = 25.0 bits (52), Expect = 7.8
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -3

Query: 245 IHIVRAFKIPSHISPLSTIKARFTSFIR 162
           ++I+R FK+ S  S LS IK      +R
Sbjct: 267 LNIIREFKLESDYSSLSAIKGHLFKLMR 294


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,165,812
Number of Sequences: 5004
Number of extensions: 38557
Number of successful extensions: 85
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 242064240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)