Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_J22
         (433 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    29   0.31 
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce...    27   1.2  
SPAC1805.02c |||electron transfer flavoprotein beta subunit |Sch...    26   2.2  
SPAPB1A10.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    26   2.8  
SPBC30B4.04c |sol1||SWI/SNF complex subunit Sol1|Schizosaccharom...    25   3.8  
SPAC105.03c |||transcription factor |Schizosaccharomyces pombe|c...    25   3.8  
SPBC8D2.15 |||mitochondrial lipoic acid synthetase |Schizosaccha...    25   5.0  
SPBC11C11.11c ||SPBC3B8.12|ATP-dependent DNA helicase Irc3 |Schi...    25   5.0  
SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr 1||...    24   8.7  
SPBPB2B2.12c |||UDP-glucose 4-epimerase|Schizosaccharomyces pomb...    24   8.7  
SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    24   8.7  
SPAC14C4.12c |||SWIRM domain protein|Schizosaccharomyces pombe|c...    24   8.7  

>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1841

 Score = 29.1 bits (62), Expect = 0.31
 Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 3/60 (5%)
 Frame = +3

Query: 54   THSVQSENDDKARSIISSSTLTMHSACEGENRMDDYLI---PPPPRPLNGCPQFTTFGHP 224
            TH + S  ++KA ++ ++S +T          +   +    PPPP PL       TF HP
Sbjct: 867  THEINSV-ENKAETVSNNSKITNFDIPNDATSLPTIITHPTPPPPPPLPVKTSLNTFSHP 925


>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 604

 Score = 27.1 bits (57), Expect = 1.2
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = +3

Query: 51  DTHSVQSENDDKARSIISSSTLTMHSACEGENRMDDYLIPPP 176
           D+H  +S    + R   S S+ + H +    +R DDY   PP
Sbjct: 138 DSHQSRSPVRSRDRDRSSRSSRSRHPSSRSRHRYDDYSRSPP 179


>SPAC1805.02c |||electron transfer flavoprotein beta subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 254

 Score = 26.2 bits (55), Expect = 2.2
 Identities = 19/50 (38%), Positives = 23/50 (46%)
 Frame = +3

Query: 192 GCPQFTTFGHPKNDTRGQHMATIVEREASASRETLDSESETHNSTHLRLN 341
           G PQFT+     +  R +    IV RE     ETL S      +T LRLN
Sbjct: 142 GWPQFTS----ASKVRIEGDKVIVTREIDGGEETLSSTLPAIITTDLRLN 187


>SPAPB1A10.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 285

 Score = 25.8 bits (54), Expect = 2.8
 Identities = 10/39 (25%), Positives = 20/39 (51%)
 Frame = +1

Query: 49  PTRTAYSRKMMTKQDLLYLQVHSQCILPVREKTEWMTIS 165
           P  ++ S+K    +DLL ++     ++P  +  EW  I+
Sbjct: 67  PQNSSTSKKRPRAEDLLVIEPSQNSLVPSTQNNEWNEIA 105


>SPBC30B4.04c |sol1||SWI/SNF complex subunit
           Sol1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 865

 Score = 25.4 bits (53), Expect = 3.8
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = -1

Query: 355 SLLPKFNRKCVLLC 314
           S++PKFNR C+ +C
Sbjct: 708 SVVPKFNRHCLKIC 721


>SPAC105.03c |||transcription factor |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 708

 Score = 25.4 bits (53), Expect = 3.8
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +3

Query: 99  ISSSTLTMHSACEGENRMDDYLIPP 173
           ++   L+M+       R DDYL+PP
Sbjct: 454 VNEKWLSMYIGINASIRQDDYLVPP 478


>SPBC8D2.15 |||mitochondrial lipoic acid synthetase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 370

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +3

Query: 198 PQFTTFGHPKNDTRGQHMATIVE 266
           P  T F   K+D RG H+ T+ E
Sbjct: 79  PLGTNFNRIKHDLRGSHLHTVCE 101


>SPBC11C11.11c ||SPBC3B8.12|ATP-dependent DNA helicase Irc3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 606

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
 Frame = -1

Query: 391 PSRSSHLLG--VARSL-LPKFNRKCVLLCVSDSLSRVSLEAE 275
           P+ S +LL   + R L L +  R C++L   DSL RVSL  +
Sbjct: 342 PTSSPNLLTQMIGRGLRLHEGKRDCLILDFCDSLRRVSLHVD 383


>SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 923

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = -3

Query: 134 TGRMHCECT*RYNRSCFVIIFRLYAVRVGDAAAANC 27
           +G MH E   RY+ S  + I  L    V ++  A+C
Sbjct: 698 SGTMHMEQLERYHASANIFIQMLRKTDVSNSVCADC 733


>SPBPB2B2.12c |||UDP-glucose 4-epimerase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = +1

Query: 43  ASPTRTAYSRKMMTKQDLLYLQVHSQCILPVREKTEWMTISFRP 174
           ASP +T     + +  ++ YL+V+S+  LP  +  EW     +P
Sbjct: 538 ASPNKTIDGTIIKSTTNV-YLKVNSETSLPTGDIVEWQNDITKP 580


>SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 682

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 15/44 (34%), Positives = 19/44 (43%)
 Frame = +3

Query: 198 PQFTTFGHPKNDTRGQHMATIVEREASASRETLDSESETHNSTH 329
           PQ + +  P   T   H +  +E EA  S ETL   S    S H
Sbjct: 487 PQHSQYD-PNGMTMRDHYSERIEPEAKPSDETLTVRSSRDLSVH 529


>SPAC14C4.12c |||SWIRM domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 297

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 12/35 (34%), Positives = 15/35 (42%)
 Frame = +3

Query: 132 CEGENRMDDYLIPPPPRPLNGCPQFTTFGHPKNDT 236
           C    +   YLI PPP P+      +T   PK  T
Sbjct: 20  CAAAIKAYQYLISPPPSPIPNDKVASTVDVPKCST 54


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,802,007
Number of Sequences: 5004
Number of extensions: 36927
Number of successful extensions: 109
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 154067960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)