Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0003_J22
(433 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_02_0601 + 11112201-11112386,11112471-11114080,11114345-111145... 29 1.2
08_01_0070 + 490655-493165 29 2.1
06_03_0743 + 24069752-24070483,24071890-24072345 28 2.8
03_06_0140 + 31951569-31951710,31951943-31952037,31952141-319539... 28 2.8
03_05_0865 - 28365430-28367640 28 2.8
12_02_1217 + 27082452-27083593,27085041-27085158 28 3.7
07_03_0698 - 20765305-20768526 28 3.7
04_03_0967 + 21318974-21319140,21321677-21321821,21322045-213221... 28 3.7
02_05_0817 + 31994241-31995908 28 3.7
12_02_1180 + 26727171-26727239,26728782-26729642 27 4.9
10_08_0146 - 15184123-15184968,15185049-15185519,15185606-15185869 27 6.5
08_02_1527 - 27664106-27664171,27664357-27664524,27664893-276651... 27 6.5
03_05_0732 - 27232299-27232535,27232717-27232746,27233094-272331... 27 6.5
12_02_0635 - 21430245-21431156 27 8.6
12_01_0326 - 2520743-2520926,2521019-2521107,2522039-2522500 27 8.6
11_06_0538 + 24759030-24759379,24759380-24759488,24759604-247596... 27 8.6
10_08_1005 - 22179407-22180122,22180210-22180653,22180737-221808... 27 8.6
01_07_0230 + 42170382-42170408,42170532-42170648,42171930-421721... 27 8.6
01_01_0975 - 7686297-7686458,7687117-7687245,7687754-7687831,768... 27 8.6
>09_02_0601 +
11112201-11112386,11112471-11114080,11114345-11114579,
11115233-11115358
Length = 718
Score = 29.5 bits (63), Expect = 1.2
Identities = 17/62 (27%), Positives = 26/62 (41%)
Frame = +3
Query: 144 NRMDDYLIPPPPRPLNGCPQFTTFGHPKNDTRGQHMATIVEREASASRETLDSESETHNS 323
N + Y + PP N P FT +GH D +A EA A R+ + ++ +
Sbjct: 49 NELQKYFVFPPGSEKN-LPPFTDYGHISQDDWDTFVADHTTAEALALRKKMSELAKKNRY 107
Query: 324 TH 329
H
Sbjct: 108 PH 109
>08_01_0070 + 490655-493165
Length = 836
Score = 28.7 bits (61), Expect = 2.1
Identities = 17/35 (48%), Positives = 19/35 (54%)
Frame = +3
Query: 105 SSTLTMHSACEGENRMDDYLIPPPPRPLNGCPQFT 209
SSTLT+ EG M PPP PL GC +FT
Sbjct: 436 SSTLTLCRDLEGAVIMPAPEASPPPPPL-GCEEFT 469
>06_03_0743 + 24069752-24070483,24071890-24072345
Length = 395
Score = 28.3 bits (60), Expect = 2.8
Identities = 25/93 (26%), Positives = 43/93 (46%), Gaps = 2/93 (2%)
Frame = +3
Query: 66 QSENDDKARSIISSSTLTMHSACEGENRMD--DYLIPPPPRPLNGCPQFTTFGHPKNDTR 239
+ E++D+A + +++TL + A G ++ Y IP P + L G QF+ K R
Sbjct: 180 EEEDEDEAAAAAATATLPLGCASIGIGKLTKGQYWIPTPSQILIGPTQFSCPVCYKTFNR 239
Query: 240 GQHMATIVEREASASRETLDSESETHNSTHLRL 338
+M + S R+ +S T + LRL
Sbjct: 240 YNNMQMHMWGHGSQYRKGPESLRGTQPTAMLRL 272
>03_06_0140 +
31951569-31951710,31951943-31952037,31952141-31953982,
31954065-31954179,31954260-31954897
Length = 943
Score = 28.3 bits (60), Expect = 2.8
Identities = 18/67 (26%), Positives = 30/67 (44%)
Frame = +3
Query: 60 SVQSENDDKARSIISSSTLTMHSACEGENRMDDYLIPPPPRPLNGCPQFTTFGHPKNDTR 239
SV NDD + + S +T T + EGE+ + L+ +PL+ +P D +
Sbjct: 688 SVTQTNDDTSSNTASETTQTPETFTEGEHHQNLQLVEFKEKPLDDLGDAKETSNP-TDLQ 746
Query: 240 GQHMATI 260
Q M +
Sbjct: 747 DQKMHVV 753
>03_05_0865 - 28365430-28367640
Length = 736
Score = 28.3 bits (60), Expect = 2.8
Identities = 21/75 (28%), Positives = 33/75 (44%), Gaps = 1/75 (1%)
Frame = +3
Query: 168 PPPPRPLNGCPQFTTFGHPKNDTRGQHMATIVEREASASRETLDSESETHNSTHLRLNFG 347
PPPP PL+ P+ ++ H + D+ + +R+ R+ +S R
Sbjct: 50 PPPPPPLSNPPRDSSSSHHR-DSSDRDRDRDRDRDRDRDRDRDRERRRDDDSRRDRDRDR 108
Query: 348 SRDRATPSRCD-DRD 389
RDR SR D DR+
Sbjct: 109 DRDRGDSSRRDRDRE 123
>12_02_1217 + 27082452-27083593,27085041-27085158
Length = 419
Score = 27.9 bits (59), Expect = 3.7
Identities = 17/46 (36%), Positives = 23/46 (50%)
Frame = +3
Query: 138 GENRMDDYLIPPPPRPLNGCPQFTTFGHPKNDTRGQHMATIVEREA 275
GE +D PPPPRPL+G F H +D + ++A R A
Sbjct: 62 GELEEEDSPRPPPPRPLSG-----LFYHTASDNQPGYLAFDAIRSA 102
>07_03_0698 - 20765305-20768526
Length = 1073
Score = 27.9 bits (59), Expect = 3.7
Identities = 22/90 (24%), Positives = 35/90 (38%), Gaps = 5/90 (5%)
Frame = +3
Query: 135 EGENRMDDYLIPPPPRPLNGC----PQFTTFGHPKNDTRGQHMATIVEREASASRETLDS 302
+G N+ DD PPPP GC P + G K D + Q + + L S
Sbjct: 218 DGGNKHDDKEQPPPPVQSGGCVKLQPPLQSDGSDKQDDKVQPLPLQSDGGNKEQPPPLQS 277
Query: 303 E-SETHNSTHLRLNFGSRDRATPSRCDDRD 389
E + L+ G +++ P + + D
Sbjct: 278 EGGDKEQPLPLQSEGGDKEQPLPLQSEGGD 307
>04_03_0967 +
21318974-21319140,21321677-21321821,21322045-21322164,
21322261-21322395,21322503-21322564,21322804-21322879,
21323555-21323656,21323732-21323848,21324403-21324461,
21324927-21325101,21325233-21325367,21325429-21325545,
21325686-21325794,21325939-21326051,21326561-21326615,
21326657-21326769
Length = 599
Score = 27.9 bits (59), Expect = 3.7
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -2
Query: 306 IRCPESLLKLKPRVQLLSPCVDPWCRF 226
IR P S LKL+ +++PCV W F
Sbjct: 559 IRTPYSELKLEQNKNVVAPCVGCWAGF 585
>02_05_0817 + 31994241-31995908
Length = 555
Score = 27.9 bits (59), Expect = 3.7
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +3
Query: 105 SSTLTMHSACEGENRMDDYLIPPPPRPLN 191
SS HSA R++ +PPPPR L+
Sbjct: 23 SSLAAAHSANRSSPRLNPTSVPPPPRQLH 51
>12_02_1180 + 26727171-26727239,26728782-26729642
Length = 309
Score = 27.5 bits (58), Expect = 4.9
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = -1
Query: 97 IDLALSSFSDCTLCVSATLPPLTVLSR 17
++ LS+ + CT VSA LPP+T+ S+
Sbjct: 37 VEDCLSTSASCTNPVSAELPPITMASQ 63
>10_08_0146 - 15184123-15184968,15185049-15185519,15185606-15185869
Length = 526
Score = 27.1 bits (57), Expect = 6.5
Identities = 20/67 (29%), Positives = 29/67 (43%)
Frame = +3
Query: 81 DKARSIISSSTLTMHSACEGENRMDDYLIPPPPRPLNGCPQFTTFGHPKNDTRGQHMATI 260
D RS++ S + A G + + PPPPRP PQ HP + R +
Sbjct: 41 DNFRSLLRSGEALLRFAFRGNSGQLTHRHPPPPRP---PPQQQ---HPHHHNRPAEIMKR 94
Query: 261 VEREASA 281
++RE A
Sbjct: 95 LQREKFA 101
>08_02_1527 -
27664106-27664171,27664357-27664524,27664893-27665168,
27665687-27665741,27666015-27666088
Length = 212
Score = 27.1 bits (57), Expect = 6.5
Identities = 13/29 (44%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Frame = +3
Query: 162 LIPPPP-RPLNGCPQFTTFGHPKNDTRGQ 245
L+PPP P PQ TT G K + RG+
Sbjct: 131 LLPPPEILPTRRLPQLTTTGEGKKEWRGR 159
>03_05_0732 -
27232299-27232535,27232717-27232746,27233094-27233155,
27233975-27234005,27234618-27234713,27234881-27234969,
27235687-27236263
Length = 373
Score = 27.1 bits (57), Expect = 6.5
Identities = 13/34 (38%), Positives = 15/34 (44%)
Frame = +3
Query: 153 DDYLIPPPPRPLNGCPQFTTFGHPKNDTRGQHMA 254
D+ PPPP P G P F F RG +A
Sbjct: 76 DESRTPPPPPPPMGAPGFGPFRWSPRPLRGAPLA 109
>12_02_0635 - 21430245-21431156
Length = 303
Score = 26.6 bits (56), Expect = 8.6
Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 3/27 (11%)
Frame = +3
Query: 138 GENRMDDYLIPPP---PRPLNGCPQFT 209
GE M D ++ PP PRP GCP+ T
Sbjct: 258 GELVMVDVVVRPPTTPPRPYVGCPRLT 284
>12_01_0326 - 2520743-2520926,2521019-2521107,2522039-2522500
Length = 244
Score = 26.6 bits (56), Expect = 8.6
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = +3
Query: 117 TMHSACEGENRMDDYLIPPPPRPLNGCPQFTTFGHPK 227
T+ A +N DDY + PPPRPL HP+
Sbjct: 18 TLPRAAGDDNADDDY-VRPPPRPLVSTVHDKPATHPQ 53
>11_06_0538 +
24759030-24759379,24759380-24759488,24759604-24759692,
24760179-24760287,24760370-24760471,24760564-24760628,
24760830-24760936,24761023-24761087,24761163-24761217,
24761305-24761465
Length = 403
Score = 26.6 bits (56), Expect = 8.6
Identities = 15/48 (31%), Positives = 22/48 (45%)
Frame = -3
Query: 254 RHVLTPGVVFGMTERSKLGTAIQRTWRGRNEIVIHSVFSLTGRMHCEC 111
RH L VFG TE S+L +Q T +E ++ + + R C
Sbjct: 355 RHPLVSSAVFGATEISQLTEVLQATRIHLSEEIVAEINEVHARYPNPC 402
>10_08_1005 -
22179407-22180122,22180210-22180653,22180737-22180861,
22180939-22181169,22181250-22181805,22181896-22182312,
22182405-22183216,22183653-22183738,22184464-22184534,
22184553-22185573,22186018-22186062,22186252-22186326,
22186797-22186871
Length = 1557
Score = 26.6 bits (56), Expect = 8.6
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +3
Query: 282 SRETLDSESETHNSTHLRLNFGSRDRATPSRCDDRDGA 395
S +T + SET NS+ +R++ G R +A DD A
Sbjct: 115 SSQTCFARSETKNSSFVRVDKGLRTKAKGGENDDEFSA 152
>01_07_0230 +
42170382-42170408,42170532-42170648,42171930-42172119,
42172250-42172369,42172448-42172740,42172872-42172966,
42173075-42173181,42173514-42173602,42173809-42173895,
42174053-42174077,42174659-42174966,42175352-42175657
Length = 587
Score = 26.6 bits (56), Expect = 8.6
Identities = 14/53 (26%), Positives = 24/53 (45%)
Frame = +3
Query: 165 IPPPPRPLNGCPQFTTFGHPKNDTRGQHMATIVEREASASRETLDSESETHNS 323
+ P P P+ P F + P +D R H T+ E+ ++ + S T +S
Sbjct: 29 LSPAPIPIPTAPSFRSLVDPVSDERVNH-DTVTSHESEIGSGSISTVSSTVSS 80
>01_01_0975 -
7686297-7686458,7687117-7687245,7687754-7687831,
7688011-7688469,7690648-7690788,7691771-7692421
Length = 539
Score = 26.6 bits (56), Expect = 8.6
Identities = 10/22 (45%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
Frame = +3
Query: 162 LIPPPPRPLNGC-PQFTTFGHP 224
++PPPP P C P +GHP
Sbjct: 334 MVPPPPHPPPFCRPPLHVWGHP 355
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,320,366
Number of Sequences: 37544
Number of extensions: 268999
Number of successful extensions: 1007
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 962
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1004
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 814473264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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