Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0003_J21
(479 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 30 0.16
SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|c... 29 0.36
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb... 27 1.1
SPBC29B5.04c |||conserved fungal protein|Schizosaccharomyces pom... 26 3.4
SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces ... 26 3.4
SPCC18.17c |||sequence orphan|Schizosaccharomyces pombe|chr 3|||... 25 4.5
SPBC2F12.08c |ceg1|pce1|mRNA guanylyltransferase Ceg1|Schizosacc... 25 5.9
SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||... 25 5.9
SPAC22G7.03 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 5.9
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 30.3 bits (65), Expect = 0.16
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 8/54 (14%)
Frame = +1
Query: 106 LPCGCPKT-------CRDPAPDCKGVCRMGCYCEEGQVRNDTGHCVKLAD-CPP 243
LPC C +T C P PDC +C + C QV++ +C ++ CPP
Sbjct: 620 LPCTCGRTRLYPPVACGTPIPDCPYLCVLPKSCHHPQVKH---NCHPTSEPCPP 670
Score = 28.7 bits (61), Expect = 0.48
Identities = 25/100 (25%), Positives = 35/100 (35%), Gaps = 12/100 (12%)
Frame = +1
Query: 124 KTCRDPAPDCKGVC----RMGCYCEEGQVRNDTGHCVKLADCPPIGAAYRLDTTEPRANG 291
K+C DP P C+ +C G C+ G C + P A + T +
Sbjct: 466 KSCSDPIPTCENICGKLLSCGHRCKYKCHLGSCGTCSETLTIPCRCTANEVQVTCEQLQN 525
Query: 292 GICPDDEEYRFC--------EPCNKTCANPNPICRAQCAR 387
G P E R C CNK C + + + AR
Sbjct: 526 GFIPTCE--RLCTILLSCGRHQCNKKCCSGYSKAQTRLAR 563
Score = 27.5 bits (58), Expect = 1.1
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = +1
Query: 307 DEEYRFCEPCNKTCANPNPICRAQCARG 390
+EE+ PCNK + N C+ C RG
Sbjct: 580 EEEHICFRPCNKKLSCGNHFCQHMCHRG 607
>SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|chr
2|||Manual
Length = 807
Score = 29.1 bits (62), Expect = 0.36
Identities = 14/34 (41%), Positives = 16/34 (47%)
Frame = -3
Query: 285 GSRLCCI*PVSSSNRWTISKFDAVSRVVSNLTLF 184
G LCCI W I F+A+ VS L LF
Sbjct: 549 GDFLCCIVSTGLLYIWNIKNFEAIHSPVSTLPLF 582
>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 2685
Score = 27.5 bits (58), Expect = 1.1
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +2
Query: 290 AAFVRMMKSIDFASLAIKHVPIRIQYVVRSVR 385
AAF R + + F+ + KH +R+Q V S R
Sbjct: 2068 AAFSRFLHRVSFSVIYTKHNDLRLQETVHSTR 2099
>SPBC29B5.04c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 605
Score = 25.8 bits (54), Expect = 3.4
Identities = 9/27 (33%), Positives = 15/27 (55%)
Frame = -2
Query: 382 HTAHDILDSDWHMFYCKARKIYTLHHP 302
H +I++ DW + +AR + LH P
Sbjct: 555 HKCSNIMEQDWFVQLARARGVIPLHIP 581
>SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1877
Score = 25.8 bits (54), Expect = 3.4
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = -1
Query: 386 LAHCARHIGFGLAHVLLQGSQNLYSSSSG 300
L H + GFGL++ L S Y +SSG
Sbjct: 227 LHHSNYYAGFGLSYYLYLSSMKAYINSSG 255
>SPCC18.17c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 488
Score = 25.4 bits (53), Expect = 4.5
Identities = 16/46 (34%), Positives = 22/46 (47%)
Frame = -1
Query: 350 AHVLLQGSQNLYSSSSGQMPPLALGSVVSNL*AAPIGGQSASLTQC 213
AH LLQ NL+ +PP L ++V N ++PI QC
Sbjct: 360 AHALLQPDHNLWMQLWRILPPNTLSTLV-NTASSPIPRSRQLAYQC 404
>SPBC2F12.08c |ceg1|pce1|mRNA guanylyltransferase
Ceg1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 402
Score = 25.0 bits (52), Expect = 5.9
Identities = 9/20 (45%), Positives = 17/20 (85%)
Frame = +2
Query: 359 IQYVVRSVREGVSKEGLLRD 418
++ V++S+ +GVSKE LL++
Sbjct: 340 VKSVLQSIEDGVSKEDLLKE 359
>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1367
Score = 25.0 bits (52), Expect = 5.9
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = -3
Query: 438 LTQLPSESRSKPSLETPSRTLRTT 367
+T +P E R PS PS +RTT
Sbjct: 113 VTSIPEEHRHLPSQWFPSNKIRTT 136
>SPAC22G7.03 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 236
Score = 25.0 bits (52), Expect = 5.9
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +1
Query: 385 RGCF*GRFASRFRRKLCQDRRMLKYC*T 468
RGC GR+ SR+ Q+ ++L C T
Sbjct: 130 RGCLNGRYLSRYLMLCLQNSKILIVCET 157
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,140,939
Number of Sequences: 5004
Number of extensions: 44805
Number of successful extensions: 131
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 184020746
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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